Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq127 136 8e-27 seq146 131 3e-25 seq157 127 4e-24 seq57 123 5e-23 seq58 116 7e-21 seq1 109 1e-18 seq170 102 2e-16 >seq127 Length=60962716 Score = 136 bits (150), Expect = 8e-27 Identities = 469/731 (64%), Gaps = 20/731 (3%) Strand=Plus/Plus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 || |||||||| || ||||| |||| ||| || ||| || ||||| ||||| || | Sbjct 5746762 AACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACC 5746821 Query 49707 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 || || || ||||||||| | |||||| | || ||||| || || | ||| | | Sbjct 5746822 AAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACT 5746881 Query 49767 atcataattatattattttttgataa---tttatatttaatatgattcgcatatattaaA 49823 ||| | | | | | | || || | || || | || |||| | |||| Sbjct 5746882 ATCCCC--TGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAA---TC-CATACAATAAA 5746935 Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||||||| ||| | || ||||| | ||| || |||||||| ||| ||||| Sbjct 5746936 CAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAA 5746995 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAA 49942 || ||||||| || | ||| ||||||||||| || || ||| ||||| | || ||||| Sbjct 5746996 CCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAAGAA 5747054 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA---TCATC 49999 ||| || || | ||| ||||| || ||||| || || |||| | ||| | |||| Sbjct 5747055 TATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAA---TGATTCAGACCCATC 5747111 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||||| | | |||||||| || || ||||| | | | || | |||| || || Sbjct 5747112 ---AATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGC 5747168 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 | ||| | | | ||||| | | | || || Sbjct 5747169 TCGAAAGAGGTGAGATTTTTGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTA 5747228 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 |||||||||||| | ||| || || |||||||| |||||| | ||||| | Sbjct 5747229 CATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGC 5747288 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 || || || | || || | | | ||| || || || ||||| ||||| Sbjct 5747289 GACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGC 5747348 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 |||||||| || | ||||| | |||| |||||||| || | ||| ||||||| Sbjct 5747349 GGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCA 5747408 Query 50300 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTT 50359 | | |||| ||||| ||| |||||||| |||||||| |||||| ||| ||| Sbjct 5747409 GTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 5747468 Query 50360 TTTATACATTT 50370 ||| ||||||| Sbjct 5747469 TTTGTACATTT 5747479 >seq146 Length=1334862 Score = 131 bits (144), Expect = 3e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 192293 TTTTTAGTTTAATAAT---ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT 192349 |||||| ||||| || |||||| | ||| | || || || || | || | |||| Sbjct 1120115 TTTTTACCTTAATCATCGTACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTT 1120056 Query 192350 TAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTA 192409 | || || ||||| | | |||| | |||| ||||||||||| || || || || | Sbjct 1120055 TCTGAATGTTGTAATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCA 1119996 Query 192410 ATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 192469 | |||||||| ||||| ||||||||||| ||||| || || |||| || || | Sbjct 1119995 GGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGA 1119936 Query 192470 TAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATA 192529 | | ||| || ||||| |||||||| || |||||||| ||||||| ||||| | || | Sbjct 1119935 TTGTATCGGAAGATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAA 1119876 Query 192530 TCTGCATT 192537 |||||||| Sbjct 1119875 TCTGCATT 1119868 >seq157 Length=426068 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | |||||||| | |||| ||| || |||||| ||||| Sbjct 398514 ATACCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCT 398455 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||| ||||| |||||||| | ||||||||||| ||| Sbjct 398454 GCCAAAGTACGACCATCCTCAAGTTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGT 398395 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || |||||||| ||| || ||||| || | ||| || || Sbjct 398394 GGGATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCA 398335 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||| || ||||| | || || | ||| || ||||| Sbjct 398334 ACCTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || | || | |||| ||| || ||||||||||||| Sbjct 398286 ATCCCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCA 398227 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||| ||||||||||| | |||||||| || ||| Sbjct 398226 GCTAGAGTACGACCATCCTCGAGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGT 398167 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| || ||||| || | || || ||| Sbjct 398166 GGAATCCCTTCCTTGTCTTGAATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCA 398107 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || |||| ||||| | ||| || ||||| Sbjct 398106 ACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 398057 >seq57 Length=33024243 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| ||||| | || | || | ||| | |||||| ||| || ||||||| Sbjct 18658231 ACCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGC 18658290 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| || |||| || | |||||| || || || || | | ||||| || ||||| Sbjct 18658291 AAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGG 18658350 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| || || ||| ||||| || | || || ||||| || Sbjct 18658351 AATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGAC 18658410 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||| || ||||||||||| |||| ||||| | || |||||||| || Sbjct 18658411 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18658461 >seq58 Length=2649046 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | ||| | ||| || || || ||||||| Sbjct 1147838 ACCACCACGAAGACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 1147779 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| || | ||| || ||||||||||| || ||||| || |||||||| Sbjct 1147778 CAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 1147719 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| || || || || |||||| || | || || ||| || Sbjct 1147718 AATACCCTCCTTATCCTGAATCTTGGCCTTCACATTATCAATCGTGTCCGAGCTTTCAAC 1147659 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||| |||||||| ||||| || || |||| ||| ||||||||| Sbjct 1147658 CTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTAACAAAGATCTGCATT 1147610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || || | ||| | || ||||| | || | || || |||||| |||||| Sbjct 1147156 ATACCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCA 1147097 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || |||||||||||||| || ||||| || || || Sbjct 1147096 GCCAAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGA 1147037 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || ||||| || | ||| || ||| Sbjct 1147036 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCA 1146977 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || || || | || || | ||| || ||||| Sbjct 1146976 ACTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 >seq1 Length=34941034 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || ||||| | ||| | || || ||| || || || Sbjct 3649565 ATGCCACCCCTGAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCT 3649506 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || | | |||| |||| |||||| ||||||||||| | ||||| ||||| ||| Sbjct 3649505 GCTAACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGT 3649446 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || | || |||||| || | ||||| || Sbjct 3649445 GGAATCCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCG 3649386 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || || || | ||||| | ||| || ||||| Sbjct 3649385 ACTTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 || ||||| | ||| || |||||||||||| | ||||| | |||| || | ||| Sbjct 3649994 TGCAAAGTGGACTCCTTCTGGATATTATAATCGGCCAATGTCCTGCCATCCTCAAGCTGT 3649935 Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||| | ||||| || || ||||| |||||||| || || || || ||| Sbjct 3649934 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTA 3649875 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 | || || || |||| || || || ||||| | || | || || || || Sbjct 3649874 GTCTTGACGTTCTCAATAGTGTCAGAACTCTCAACTTCCAAGGTTACTGTCTTGCCTGTG 3649815 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||||||| ||| |||||||| Sbjct 3649814 AGGGTTTTAACAAAGATCTGCAT 3649792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | || | ||| || ||||| ||||| | Sbjct 3650703 ACCACCGCGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATATTGTAATCTGC 3650644 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| |||| ||||| || || ||||||||||| | |||||| ||||| || || Sbjct 3650643 CAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGATCTGGAGG 3650584 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || | || |||||| || | ||| || || || Sbjct 3650583 GATACCTTCCTTGTCCTGAATCTTGGTCTTCACATTATCAATTGTATCAGAACTCTCCAC 3650524 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || ||||| | || || | ||| |||||||| Sbjct 3650523 CTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 3650476 >seq170 Length=38796167 Score = 102 bits (112), Expect = 2e-16 Identities = 173/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 192293 TTTTTAGTTTAATAA---TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT 192349 |||||| |||||| | ||||||| | ||| | || || ||||| | | |||| Sbjct 3261118 TTTTTACTTTAATCACCGTACCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTT 3261177 Query 192350 TAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTA 192409 | || || ||||| | |||| | |||| ||||||||||| | || || || | Sbjct 3261178 TCTGAATGTTGTAATCTACGAGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCA 3261237 Query 192410 ATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 192469 | |||||||| |||| |||||||| || ||||| || || |||| || || | Sbjct 3261238 GGCGTTGTTGATCTGGTGAAATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGA 3261297 Query 192470 TAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATA 192529 | ||| | ||||| |||||||| || |||||||| | ||||| ||||| | || | Sbjct 3261298 TTATATCGAAAGATTCGACTTCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAA 3261357 Query 192530 TCTGCATTTT 192539 |||||||||| Sbjct 3261358 TCTGCATTTT 3261367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983972351042100