Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq146 141 2e-28 seq127 120 5e-22 seq57 118 2e-21 seq170 111 3e-19 seq58 107 3e-18 seq157 104 4e-17 seq1 84.2 4e-11 >seq146 Length=1334862 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| ||||||| | ||| | || || || || | || | ||||| ||| || | Sbjct 1120103 TCATCGTACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGT 1120044 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || ||||||||||| || || ||||| | | ||||| | Sbjct 1120043 AATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGAT 1119984 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 | ||||| ||||||||||| ||||| || || |||| || || || ||||| || | Sbjct 1119983 CTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAG 1119924 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| |||||||| || |||||||| ||||||| ||||| | ||| ||||||||| Sbjct 1119923 ATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATT 1119868 >seq127 Length=60962716 Score = 120 bits (132), Expect = 5e-22 Identities = 269/396 (68%), Gaps = 20/396 (5%) Strand=Plus/Plus Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 || |||||||| || ||||| |||| ||| || ||| || ||||| ||||| || | Sbjct 5746762 AACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACC 5746821 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || || || ||||||||| | |||||| | || ||||| || || | ||| | | Sbjct 5746822 AAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACT 5746881 Query 39069 atcataattatattattttttgataa---tttatatttaatatgattcgcatataGTAAA 39125 ||| | | | | | | || || | || || | || |||| | |||| Sbjct 5746882 ATCCCC--TGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAA---TC-CATACAATAAA 5746935 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| ||| | |||||||| | ||| || |||||||| ||| ||||| Sbjct 5746936 CAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAA 5746995 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAA 39244 || ||||||| || | ||| ||||||||||| || || ||| ||||| | || ||||| Sbjct 5746996 CCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAAGAA 5747054 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA---TCATC 39301 ||| || || | ||| ||||| || ||||| || || |||| | ||| | |||| Sbjct 5747055 TATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAA---TGATTCAGACCCATC 5747111 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCttttttttt 39337 |||||| | | |||||||| || || ||||| Sbjct 5747112 ---AATCCACCTCAGTGCCCAATCAGCCTTCTTTTT 5747144 >seq57 Length=33024243 Score = 118 bits (130), Expect = 2e-21 Identities = 180/255 (71%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 171819 AGTATACTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGC 171877 ||| | ||| ||| | ||| || ||||||||| || || | || | || | ||| | Sbjct 18658207 AGTCTTCTTCTTACGCTTCTTAGCACCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGA 18658266 Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 |||||| || || ||||| | | | || | || || | |||||| || || || Sbjct 18658267 CTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 18658326 Query 171938 AATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 ||| | | |||||||| ||||| || |||||||| ||||| || || ||| ||||| Sbjct 18658327 AATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATT 18658386 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 172057 || || || || ||||| |||||||| || ||||||||||| |||| ||||| | Sbjct 18658387 GTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 18658446 Query 172058 GAATATCTGCATTTT 172072 ||| |||||||| || Sbjct 18658447 GAAGATCTGCATCTT 18658461 >seq170 Length=38796167 Score = 111 bits (122), Expect = 3e-19 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 171826 TTTTTAGTTTCATAA---TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTT 171882 |||||| ||| || | ||||||| | ||| | || || ||||| | | |||| Sbjct 3261118 TTTTTACTTTAATCACCGTACCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTT 3261177 Query 171883 TAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTA 171942 | ||| || |||||| | || || | | || ||||||||||| | || ||||| | Sbjct 3261178 TCTGAATGTTGTAATCTACGAGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCA 3261237 Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 | ||||| || |||| |||||||| || ||||| || || |||| || || | Sbjct 3261238 GGCGTTGTTGATCTGGTGAAATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGA 3261297 Query 172003 TAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATA 172062 | |||| | ||||| |||||||| || |||||||| | ||||| ||||| | ||| | Sbjct 3261298 TTATATCGAAAGATTCGACTTCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAA 3261357 Query 172063 TCTGCATTTT 172072 |||||||||| Sbjct 3261358 TCTGCATTTT 3261367 >seq58 Length=2649046 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || | ||| | ||| || ||| || ||||| | Sbjct 1147838 ACCACCACGAAGACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 1147779 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || || | ||| || |||||||| || || ||||| ||||||||||| Sbjct 1147778 CAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 1147719 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || || || |||||| || || || || ||| || Sbjct 1147718 AATACCCTCCTTATCCTGAATCTTGGCCTTCACATTATCAATCGTGTCCGAGCTTTCAAC 1147659 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| |||||||| ||||| || || |||| || ||||||||| Sbjct 1147658 CTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTAACAAAGATCTGCATT 1147610 >seq157 Length=426068 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | || | |||| ||| || ||||||||||| Sbjct 398286 ATCCCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCA 398227 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || | || || | |||||| |||||||| || | ||||||||||| ||| Sbjct 398226 GCTAGAGTACGACCATCCTCGAGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGT 398167 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| || ||||| || || || || ||| Sbjct 398166 GGAATCCCTTCCTTGTCTTGAATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCA 398107 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || || |||| ||||| | || || ||||| Sbjct 398106 ACCTCAAGGGTAATGGTCTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 398057 >seq1 Length=34941034 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||| ||||| || | |||||||||||||| ||| || ||||| || ||| || Sbjct 3650165 TGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTAATC 3650106 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || |||||||| ||| ||||| || || ||||| || ||| Sbjct 3650105 TTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTCTTGCCA 3650046 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || |||||||| Sbjct 3650045 GTAAGAGTCTTCACAAAGATCTGCAT 3650020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904680648706800