Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq145 131 5e-25 seq187 116 1e-20 seq127 114 4e-20 seq170 113 1e-19 >seq145 Length=44152522 Score = 131 bits (144), Expect = 5e-25 Identities = 286/413 (69%), Gaps = 19/413 (5%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAA-ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||| |||||||| || | || | ||||||||| || ||||| ||||||||||||| Sbjct 41065073 AAAACCATCCAT-CTCGACAAGCAGTTGATTAAGAGTACTTTCCCGCTCATCATTTGAAC 41065015 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAA 289055 | ||| ||| | || |||| || |||| |||||||| || || || || Sbjct 41065014 CA---GAAAAACCTCCA-CG-TCCTCTTGCCCGGCCAATGGCATCAATCTCATCGATAAA 41064960 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCA--AATAATTCTCTTACACGGGATGCT 289113 || | || || | | |||||| || || | ||||| | |||||| | ||||| | Sbjct 41064959 AACAATACTAGGTGCACATTGTCTTGC--TTCCTGGAATAAATTTCTTACCCTGGATGGT 41064902 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGT-TACATT 289172 || | ||||||| ||||||| | ||| || ||| | |||| | || ||| | |||| Sbjct 41064901 CCTACACCAACAAACATTTCCATAAAATCTGAACCAGATA-TGGATAGAAAGGGTACACC 41064843 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 | ||| ||||| |||| | || || || ||||| ||||| || ||||| || |||| Sbjct 41064842 AGATTCCCCTGCAGTTGCCTTAGCAAGGAGAGTCTTTCCTGTCCCTGGTGGACCAACTAA 41064783 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAA 289290 ||| | ||||| || | |||||| |||| || ||| ||| |||| || |||| | Sbjct 41064782 AAGAGCACCCTTAGGAATTTTTGCACCCA--AGTCTTCATACTTCTTGGGATTCTTAAGG 41064725 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || | |||| ||| | ||| | ||||||||||||||||| || ||||| Sbjct 41064724 AAGTGCACAAACTCCATGATTTCTTGCTTTGCCTCATCACATCCGGCAACATC 41064672 >seq187 Length=45274173 Score = 116 bits (128), Expect = 1e-20 Identities = 280/418 (67%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| || | || || || ||||| ||||||||||||||||| Sbjct 20417910 CTCAAAGCCATCCATCTCAGTCAGAAGCTGGTTCAGTGTCTGTTCCCTTTCATCATTGCC 20417969 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || | |||| || | | | ||||| | || || ||||||||||| || | || Sbjct 20417970 TCCCC--CAATC-CCAGTA---CCCCTTTGCCTCCCCACTGCATCAATTTCATCCACAAA 20418023 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| |||| ||||| | || | || | || | || || || ||||| Sbjct 20418024 CACAATACAAGGAGCATTTTCCTTTGCTTTCTTGAAAAGGTCACGCACTCGTGAAGCTCC 20418083 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 | ||||||| ||||||| |||||||| || |||| | | || | |||| ||| | Sbjct 20418084 CACACCAACAAACATTTCAACAAATTCTGACCCGGA-AATGGAGAAAAATGGAACACCAG 20418142 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || | ||| | ||||| || ||||| || || || ||||| || | | | Sbjct 20418143 CTTCCCCAGCAATAGCCTTAGCCAGCAGGGTCTTTCCAGTCCCTGGTGGGCCAACAAGCA 20418202 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 |||| ||||| || | || ||| ||| | | ||||||| | |||| ||||| Sbjct 20418203 GAACACCCTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTTTTTAGAAATT 20418262 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || | |||| || || | ||||| |||||| || || |||||| ||||||| Sbjct 20418263 CCACCACTTCCATAAAATCCTGCTTTGCTTCATCAACACCAGCAACATCATCAAAAGT 20418320 >seq127 Length=60962716 Score = 114 bits (126), Expect = 4e-20 Identities = 575/904 (64%), Gaps = 29/904 (3%) Strand=Plus/Minus Query 133045 AGAACCCCTTCTAACCCCAGACGATAATAGGTTTGTTATGTTCCCAATTAAGGACGACGA 133104 ||| || |||||| ||||| || ||| || ||||||||||||| | || | Sbjct 5747547 AGACCCACTTCTAGCCCCAAACCCAGATAAATTCTGTATGTTCCCAATTGAATACCCACA 5747488 Query 133105 GATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGATTT 133164 || ||| | ||||| |||||| ||| | |||||||| | ||||| ||| | Sbjct 5747487 AATCTGGGAAATGTACAAAAAAGCCGAAGCATCGTTTTGGACGGCTGAAGAAGTCGATCT 5747428 Query 133165 ATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCTAT 133224 ||| || || ||||||||| |||| ||| || || |||||||| ||| | Sbjct 5747427 ATCATCCGATTTAGGTCACTGGGAAACCCTAACTTCCGACGAGAAACATTTCATTACACA 5747368 Query 133225 GATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTT 133284 || | || || || || || ||||| || || || |||||| | | | ||||| Sbjct 5747367 CGTTCTCGCCTTCTTCGCCGCATCAGATGGAATCGTGCTGGAAAATCTCGCAGGTCGGTT 5747308 Query 133285 TATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGA 133344 |||| ||| || ||| | || ||||| || || ||||| || | || || || || || Sbjct 5747307 TATGAAAGAGGTGCAAGTCGCTGAAGCGCGCGCATTTTACGGTTTTCAAATCGCCATTGA 5747248 Query 133345 AAATATCCATTCTATCACATATTCTACT-CTAATTGATACTTACATCAAAGATACCGTCC 133403 ||| || |||||| | || || ||| || | || |||||||| || ||| | || Sbjct 5747247 AAACATTCATTCTGAAATGTACTC-ACTCCTTTTAGAAACTTACATTAAGGATTCATCCC 5747189 Query 133404 AGAAGCACAAACTATTCAACGCCATTAGCGAA---TTTCCTTGTATTAAAAAGAAATCTG 133460 | || | || || || || |||| | || ||| | |||||||| ||| Sbjct 5747188 AAAAATCTCACCTCTTTCGAGCAAT---CGAAACCGTGCCCTGTGTGAAAAAGAAGGCTG 5747132 Query 133461 ACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT--TTTGCTACTCGTCTCGTTGC 133518 | ||||| | | ||||| | | || || | ||||| | | |||| Sbjct 5747131 ATTGGGCACTGAGGTGGAT-----TGATGGGTCTGAATCATTTGCAGAGAGGATAATTGC 5747077 Query 133519 TTTTGC-TGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTA 133577 ||||| |||| | || || || || ||| || |||||||| ||||||||||||| Sbjct 5747076 GTTTGCTTGTA-TTGAAGGGATATTCTTCTCAGGAAGTTTCTGCTCCATTTTTTGGCTTA 5747018 Query 133578 AAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | |||||||| | | || || | ||||| || ||| | || || | ||||| | Sbjct 5747017 AGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTCGAATGAATTGATCTCTCGAGACGAAG 5746958 Query 133638 CACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCA-CTCAAAAAG 133696 |||||| || ||||| |||| || | | | || | | | || || Sbjct 5746957 GACTTCATTGTGATTTTGCTTGTTTA-TTGTATGGATTGTTGAAGAAGAAGCCGAATGAG 5746899 Query 133697 AATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGT 133756 | || | | | || | | ||| || |||||||||||| |||||| | || Sbjct 5746898 GAGAAAGTGCAGGGGATAGTGAAAGATGCAGTTGAAATTGAGAGGGAATTTGT-----GT 5746844 Query 133757 GCTCTGCCGTGCC-GTTTAATTGGTATGAATGA----TGTGCTGATGCAGCGTTATATTG 133811 | ||| |||| ||| |||||| | |||| || | ||||| | ||||||| Sbjct 5746843 GTGATGCATTGCCTGTTGCTTTGGTAGGGATGAACTGTGAGTTGATGAGTCAGTATATTG 5746784 Query 133812 AATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCA 133871 | ||||| ||||| |||||| | | | | ||| | | ||||||||||| | | Sbjct 5746783 AGTTTGTTGCTGATAGATTGTTGGCTGCGCTTGGTTGTGGGAAGATTTACGGCGTGTCGA 5746724 Query 133872 ATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGA 133931 |||| || || ||||||||| ||| || || |||||||||||||| ||| || Sbjct 5746723 ATCCGTTTGATTGGATGGAGTTGATTTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGA 5746664 Query 133932 GGGT 133935 | || Sbjct 5746663 GAGT 5746660 Score = 114 bits (126), Expect = 4e-20 Identities = 233/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||| || || |||||| ||| | | | || Sbjct 57117646 ATTTCTAACAGTGCCATCATATTTAACCATGATATCCTCCATAGCCTTAACCAGTCTCCG 57117705 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || || ||||| ||| ||||| ||||| |||||||||| ||| | | |||||| Sbjct 57117706 CTGTATGTAGCCAGTCTCAGAGGTTTTAACAGCAGTATCAATTAAACCTTCTCTACCACC 57117765 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||||||||| || | ||| | || || || | | | | || |||| || || Sbjct 57117766 CATAGCATGGAAAAAGAACTCCTGAGGAGTTAATCCTCTCAGATACGAATTCTCCACAAA 57117825 Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 ||||| || || || |||| || ||| || || || |||| || | | Sbjct 57117826 CCCACGACTTTCTGGACCGTAATCATC---CTTTGTGAAATGGGGCAACGTTCGACCAAC 57117882 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || | || || || ||||| ||||| ||||||||||| | || | | ||||||| Sbjct 57117883 AAAACCAAAAGGTATTCGTTTTCCTTCAACATTCTGCTGTCCTACACAAGCAGTCATCTG 57117942 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| || | | ||| || ||||| || ||| | |||||| Sbjct 57117943 GGAAATGTTGATAAAACTTCCTTTGGACCCTGCAGTAACCATA 57117985 >seq170 Length=38796167 Score = 113 bits (124), Expect = 1e-19 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| | ||| ||||| || ||||| |||||| | |||| | || Sbjct 3066222 GGCGATCAGCCCACAGCGTTCACATACATGAACTCTGTATGCATCACTTTGGTCAAAAAG 3066163 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || |||| ||| ||||| || | |||||| || || | |||||| || || Sbjct 3066162 CCTTTCTTTAAGGAAGTGAGCAGCACCATGGGCAATCATGCAGTCTCTCTCCATCTCTCC 3066103 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 |||||||||||||||||| |||| | ||||| |||||||| || |||||| Sbjct 3066102 GAAACGAAGACCACCATCACGAGATCGTCCCTCAGCAGGCTGCCGGGTGAGA 3066051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471058654494902