Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq127 113 6e-19 >seq127 Length=60962716 Score = 113 bits (124), Expect = 6e-19 Identities = 181/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || ||||| || |||||||| || || |||||||| || | | | || || ||||| Sbjct 5747236 GAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGC 5747295 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||| ||||| || || || || || |||||| || || |||||||| Sbjct 5747296 ACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAG 5747355 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || || || ||||||| | || | ||||||| | Sbjct 5747356 AAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCT 5747415 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| || || || || || || ||||| | ||| || ||||| ||||||||| Sbjct 5747416 AAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTAC 5747475 Query 869873 ATCTCCCATACTTGCTGGTA 869892 || ||||| | ||| |||| Sbjct 5747476 ATTTCCCAGATTTGTGGGTA 5747495 Score = 111 bits (122), Expect = 2e-18 Identities = 192/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| ||||| ||| || ||| | | || ||||| || || |||||| Sbjct 5746957 CCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATTAGCCCACGCTTC 5747016 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || |||||||| |||| ||||||||| || ||||| || || || || | ||||| Sbjct 5747017 TTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCAATACAAGCAAAC 5747076 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | || | || ||| ||||| | || || ||| | |||||| ||| ||||| Sbjct 5747077 GCAATTATCCTCTCTGCAAATGATTC-AGACCCATCA-----ATCCACCTCAGTGCCCAA 5747130 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || ||||| || |||| | ||||| || ||||| || ||||||||||| |||| | Sbjct 5747131 TCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGATTTTTGG 5747190 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | | ||||| | || || || | ||||| || || Sbjct 5747191 GATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTA 5747228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103836424767982