Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq146 131 1e-25 seq1 120 3e-22 seq170 89.7 4e-13 seq57 86.0 5e-12 >seq146 Length=1334862 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| |||| || |||||||| ||| | ||| ||| || Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 110332 CGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||||| ||| | | || |||||| ||||| ||||||||||| | || |||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACA-AAGATCCAAGACAAAGAAGGAATTCCACCAGATC 1119986 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | || |||| || || ||||| |||| |||| ||||| | || ||||||| Sbjct 1119987 AACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACA 1120046 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||| |||||||| ||| | ||| ||||| |||| || || || || Sbjct 1120047 ACATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGG 1120095 >seq1 Length=34941034 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| || ||| | || ||||| ||||| || | ||| || || | Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||||| | ||||| |||||| | || | || || Sbjct 3650080 -GATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCA 3650138 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | ||| ||||||||||| ||||||| ||| ||| |||| |||||||| Sbjct 3650139 ACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAA 3650198 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || || || || || |||||| |||| Sbjct 3650199 CATCCAGAAGGAGTCCACTTTGCACCTGGT 3650228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | || ||||| || | ||| | ||| ||| | Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || |||||| ||||| ||||| | || || || Sbjct 3649852 GACACTATTGAGAACGTCAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 3649911 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||||||||| ||||||| ||| ||| |||| ||||| || Sbjct 3649912 CAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAAT 3649971 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || |||||| ||||| Sbjct 3649972 ATCCAGAAGGAGTCCACTTTGCACCTGGTG 3650001 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GCCTG 110330 ||||| || || || || ||| | || ||||| ||||| || | ||| || || | Sbjct 3650248 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACACTTGAAGTTGAAAGCTCG 3650307 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 |||||| | | | | || || ||||| | ||||| || || | || | || | Sbjct 3650308 --GATACTATTGACAATGTGAAGGCAAAGATCACAGACAAGGAGGGAATTCCAGCTGACC 3650365 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | ||||| || ||||||||||||| | | || | || || || | Sbjct 3650366 AGCAGAGACTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGGACTCTAGCTGACTATA 3650425 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||| ||||| || |||||| |||| Sbjct 3650426 ACATTCAAAAGGAATCAACCTTGCACTTGGT 3650456 >seq170 Length=38796167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| |||| | |||||||| ||| | ||| || || Sbjct 3261367 AAAATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGAATCT 3261308 Query 110330 GACGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 ||||| ||| | | || |||||| ||||| ||||| ||||| | | || Sbjct 3261307 TTCGATATAATCGACAACGTGAAAACA-AAGATCCAAGACAAGGAAGGAATTTCACCAGA 3261249 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||| | || |||| || | ||||| |||| |||| ||||| | | ||||| Sbjct 3261248 TCAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAGATTA 3261189 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| ||||||| | | | || ||||||| || || || || || Sbjct 3261188 CAACATTCAGAAAGAATTGAAGCTTCATTTGGTGTTCAGGCTTCGTGGTGG 3261138 >seq57 Length=33024243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 || ||||| || || || ||||| |||| || |||||||| ||| | ||| || | || Sbjct 18658461 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 18658402 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || ||| ||||| |||||||||||| | || || Sbjct 18658401 TC-CGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGA 18658343 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | || |||| || || ||||| || || |||| | ||| | || ||||| Sbjct 18658342 CCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTA 18658283 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| || ||||| || || Sbjct 18658282 CAACATCCAGAAAGAGTCGAC 18658262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412639101969278