Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq127 138 2e-26 seq20580 87.8 3e-11 >seq127 Length=60962716 Score = 138 bits (152), Expect = 2e-26 Identities = 225/323 (70%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| ||||||||| || ||| | || ||||| || || |||||| Sbjct 5746957 CCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATTAGCCCACGCTTC 5747016 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || |||||||| |||| |||||||| || ||||| || || || || | ||||| Sbjct 5747017 TTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCAATACAAGCAAAC 5747076 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | | || ||| ||||| | || || ||| | |||||| ||| ||||| Sbjct 5747077 GCAATTATCCTCTCTGCAAATGATTC-AGACCCA-----TCAATCCACCTCAGTGCCCAA 5747130 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || |||| ||||||| || ||||| || ||||||||||| || | | Sbjct 5747131 TCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGATTTTTGG 5747190 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||||| | ||| || || | ||||| ||||| | || || || |||||||| Sbjct 5747191 GATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAATGAATGTTTTCA 5747250 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 |||||||| || || || ||||| Sbjct 5747251 ATGGCGATTTGAAAACCGTAAAA 5747273 Score = 95.1 bits (104), Expect = 2e-13 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||| ||||| ||||| || || || || || || || |||||| || || ||| Sbjct 5747290 ACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCG 5747349 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| |||||||| ||||| | || || || ||||||| | || | ||||| Sbjct 5747350 GCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAG 5747409 Query 796279 TGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTT 796338 || | |||| || ||||| || || || |||||||| || || ||||| ||| Sbjct 5747410 TGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTT 5747469 Query 796339 TTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| ||||| || || |||| || ||||||| Sbjct 5747470 TTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACA 5747509 >seq20580 Length=631 Score = 87.8 bits (96), Expect = 3e-11 Identities = 213/313 (68%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 2075888 CGCCCACGACGGGCTGCCTGGTCGGGTGGGCGCGCCAGGGCGTGCTCCTGCTCAACA-CG 2075946 ||||| | |||| || |||| | ||||| |||||||| ||||| ||||||||| || Sbjct 326 CGCCCGCCACGG-CTTTCTGGAAAGCTGGGCACGCCAGGGTGTGCTTTTGCTCAACAGCG 384 Query 2075947 TGCCTCACGGTCGAGGCCCGCAGTCCGGGGTCGCACCGCGACCGCGGGTGGGAGCCCTTT 2076006 ||| | || || || | |||| | | | |||| | | || || ||||| | ||| Sbjct 385 TGC-TGACTGTTGAAGAGGGCAGGGCTGCGGCGCATCAGGGACGTGGTTGGGAACGCTTC 443 Query 2076007 ACCGACGCCGTGATCT-CGCTCGTGAGCAAGCGCTCGCCGCACCCCGTGGTCTTTATGCT 2076065 || || ||||| ||| ||| ||| | | ||| |||||| || ||||||||||| || Sbjct 444 ACGGATGCCGTTATCCGCGC-CGTCAACGAGCA---GCCGCAGCCGGTGGTCTTTATACT 499 Query 2076066 GTGGGGCCGCGACGCCCAGAGCAAG-CGCAAGTTGATCGACCAGAACCGACACCGCATCC 2076124 ||||| | | || || | ||| || | | | |||| || || || | | | | Sbjct 500 CTGGGGTTCCTATGCGCAAAAGAAGGCGGCATTCG-TCGATACCAAGCGCCATCTCGTGC 558 Query 2076125 TCGAAGCCGCCCACCCCTCGCCCAAGTCGGCCACCAACGGATTTTTCGGCTGCCGGCACT 2076184 | || ||| || || ||||| |||||| ||||||||||||| ||||||| | Sbjct 559 TGAAATCCGTGCATCCGTCGCCGCTTTCGGCCCATTCCGGATTTTTCGGCAGCCGGCATT 618 Query 2076185 TTTCGCAGGCCAA 2076197 |||| || |||| Sbjct 619 TTTCCAAGACCAA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911965249417994