Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq57 109 4e-19 seq58 107 1e-18 seq157 104 2e-17 seq146 89.7 3e-13 >seq1 Length=34941034 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| || | || |||| ||| | |||| |||||| || ||||| || || | | Sbjct 3649790 CCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3649731 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| |||| |||||||||||| ||||| || | |||||||||| | || Sbjct 3649730 AGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3649671 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| || | |||||| || || | || | || | ||||| Sbjct 3649670 ATACCCTCCTTATCAGTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACC 3649611 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 3649610 TCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||| |||||||||||||| | ||| | || |||| Sbjct 3650459 AGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCC 3650400 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||| |||| |||||||| || | ||||||||||| Sbjct 3650399 TCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCT 3650340 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || || | || | || | || || |||| || |||||| Sbjct 3650339 GTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTC 3650280 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 3650279 TTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATA---GTCC 34807 ||||||||||| | || |||||||| | ||| ||||||||| || ||||| | || Sbjct 3650018 CCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCC 3649959 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || |||| |||| || || || || ||||| ||||| || | ||||||||| | Sbjct 3649958 AATGTCCTGC---CATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGT 3649902 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || |||||| | || | ||| ||| Sbjct 3649901 GGGATTCCTTCCTTGTCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCA 3649842 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||||| ||||| || |||||||| || |||||||||||||| Sbjct 3649841 ACTTCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| | || | | |||| |||||||| || || || ||| Sbjct 3649526 TCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAG 3649467 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| | ||||| ||| | || | |||||||||||| | || || ||||| || Sbjct 3649466 ATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGGATCTTGGTCTTGAC--AT 3649409 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| || | |||||| || | || || |||||||| ||||| || || Sbjct 3649408 --TATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTT 3649351 Query 34963 TACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 3649350 CACAAAGATTTGCAT 3649336 >seq57 Length=33024243 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||| ||||| ||||| || || | || |||| |||| Sbjct 18658247 AGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCT 18658306 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||||||||| ||||| ||||| |||||| | || | || || ||||| Sbjct 18658307 TCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 18658366 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||| || || | ||||| || || ||||| || | |||||| Sbjct 18658367 TGGATCTTTGCTTTCAC--AT--TGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTAT 18658422 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||| ||||| || || ||||||||||| Sbjct 18658423 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq58 Length=2649046 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || || || | ||| | ||| | || || || |||||||| ||||| Sbjct 1146890 CTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAA 1146831 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903 |||||| | |||||||||| | || | || |||||||| | ||||| ||||||| Sbjct 1146830 GATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACGTT 1146771 Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 ||| ||||| | | ||||| |||| ||| || ||||| || || || ||| Sbjct 1146770 GTCGATAGTATCGGAACTT-----TCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTC 1146716 Query 34961 TTTACAAAGATCTGCAT 34977 || || ||||||||||| Sbjct 1146715 TTGACGAAGATCTGCAT 1146699 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||||||||| | || |||| ||||| ||| |||||| || || || || |||| Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | |||| || || ||||| || || || |||| | ||||||||| | | Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | |||||||| || | || ||| ||||| | |||| || | ||| | Sbjct 1147491 GAATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAA 1147432 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || | |||||| ||||| |||||||| Sbjct 1147431 CCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 >seq157 Length=426068 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||||||| || || || | ||| | || |||| Sbjct 398040 AGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCT 397981 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| |||||||| ||||||||||| | || | ||||||||||| Sbjct 397980 TCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 397921 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || || | || | ||| ||| || || | || || ||| Sbjct 397920 TGAATCTTTGCCTTAACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTC 397861 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||| ||||| Sbjct 397860 TTACCAGTCAAGGTCTTAACAAAGATTTGCAT 397829 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| ||||||||||||||||| || | ||| | || |||| Sbjct 398952 AGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCT 398893 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| ||||| || ||||| | ||||| ||| | || | ||| |||||||| Sbjct 398892 TCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCC 398833 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||| ||| ||| || || |||| || || | ||| || || | || || Sbjct 398832 TGTATCTTTGTTTTCAC--AT--TATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGAT 398777 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| || || |||||||| Sbjct 398776 CGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| || || | | | || | || Sbjct 398724 AGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCC 398665 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || | |||||||||| | || | ||||||||||| Sbjct 398664 TCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCT 398605 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||| ||| || || | || | || | |||||| || | || |||||| Sbjct 398604 TGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTC 398545 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || || ||||| Sbjct 398544 TTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 >seq146 Length=1334862 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||||| || || ||||||||||| || || | || | | | Sbjct 1120084 CCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCC 1120025 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| ||| ||||||||||| ||||| ||||| || ||| | || | || || || Sbjct 1120024 ATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTT 1119965 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATT-CATTG---GCCTCGACATCAACGG 34937 ||| | || ||| ||| || | | |||||| || | | || || || | || Sbjct 1119964 GTCTTGGATCTTTGTTTTCAC----GTTGTCGATTGTATCGGAAGATTCCACTTCTAGGG 1119909 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| || ||||| || || || |||||||| Sbjct 1119908 TTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325533048292274