Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20
2015-07-07] 40,246 sequences; 566,550,431 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 1e-24
seq57 109 4e-19
seq58 107 1e-18
seq157 104 2e-17
seq146 89.7 3e-13
>seq1
Length=34941034
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| || | || |||| ||| | |||| |||||| || ||||| || || | |
Sbjct 3649790 CCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3649731
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | || |||| |||| |||||||||||| ||||| || | |||||||||| | ||
Sbjct 3649730 AGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3649671
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| |||||||| || | |||||| || || | || | || | |||||
Sbjct 3649670 ATACCCTCCTTATCAGTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACC 3649611
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||| ||| |||||||| || || |||||||| |||||||||||||||
Sbjct 3649610 TCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||| |||||||||||||| | ||| | || ||||
Sbjct 3650459 AGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCC 3650400
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || |||||||| |||| |||||||| || | |||||||||||
Sbjct 3650399 TCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCT 3650340
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| || || | || | || | || || |||| || ||||||
Sbjct 3650339 GTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTC 3650280
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| ||||| || |||||||||||
Sbjct 3650279 TTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248
Score = 100 bits (110), Expect = 2e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATA---GTCC 34807
||||||||||| | || |||||||| | ||| ||||||||| || ||||| | ||
Sbjct 3650018 CCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCC 3649959
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| |||| |||| || || || || ||||| ||||| || | ||||||||| |
Sbjct 3649958 AATGTCCTGC---CATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGT 3649902
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927
|| | || |||||||| | || || |||||| | || | ||| |||
Sbjct 3649901 GGGATTCCTTCCTTGTCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCA 3649842
Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || | ||||| ||||| || |||||||| || ||||||||||||||
Sbjct 3649841 ACTTCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
||||| || ||||| ||||| | || | | |||| |||||||| || || || |||
Sbjct 3649526 TCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAG 3649467
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
||||| | ||||| ||| | || | |||||||||||| | || || ||||| ||
Sbjct 3649466 ATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGGATCTTGGTCTTGAC--AT 3649409
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
||||||| || | |||||| || | || || |||||||| ||||| || ||
Sbjct 3649408 --TATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTT 3649351
Query 34963 TACAAAGATCTGCAT 34977
|||||||| |||||
Sbjct 3649350 CACAAAGATTTGCAT 3649336
>seq57
Length=33024243
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| || ||| ||||| ||||| || || | || |||| ||||
Sbjct 18658247 AGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCT 18658306
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| ||||||||||| ||||| ||||| |||||| | || | || || |||||
Sbjct 18658307 TCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 18658366
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || ||| ||| || || | ||||| || || ||||| || | ||||||
Sbjct 18658367 TGGATCTTTGCTTTCAC--AT--TGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTAT 18658422
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||| ||||| || || |||||||||||
Sbjct 18658423 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458
>seq58
Length=2649046
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| || || || || | ||| | ||| | || || || |||||||| |||||
Sbjct 1146890 CTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAA 1146831
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903
|||||| | |||||||||| | || | || |||||||| | ||||| |||||||
Sbjct 1146830 GATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACGTT 1146771
Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960
||| ||||| | | ||||| |||| ||| || ||||| || || || |||
Sbjct 1146770 GTCGATAGTATCGGAACTT-----TCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTC 1146716
Query 34961 TTTACAAAGATCTGCAT 34977
|| || |||||||||||
Sbjct 1146715 TTGACGAAGATCTGCAT 1146699
Score = 98.7 bits (108), Expect = 6e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808
||||||||||||| | || |||| ||||| ||| |||||| || || || || ||||
Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552
Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868
|| | | | |||| || || ||||| || || || |||| | ||||||||| | |
Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492
Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928
| | |||||||| || | || ||| ||||| | |||| || | ||| |
Sbjct 1147491 GAATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAA 1147432
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | || |||||||| || || | |||||| ||||| ||||||||
Sbjct 1147431 CCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383
>seq157
Length=426068
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| ||| |||||||||||| || || || | ||| | || ||||
Sbjct 398040 AGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCT 397981
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||| |||||||| ||||||||||| | || | |||||||||||
Sbjct 397980 TCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 397921
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| || || | || | ||| ||| || || | || || |||
Sbjct 397920 TGAATCTTTGCCTTAACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTC 397861
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | |||||| |||||||| |||||
Sbjct 397860 TTACCAGTCAAGGTCTTAACAAAGATTTGCAT 397829
Score = 100 bits (110), Expect = 2e-16
Identities = 153/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| ||| ||||||||||||||||| || | ||| | || ||||
Sbjct 398952 AGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCT 398893
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| ||||| || ||||| | ||||| ||| | || | ||| ||||||||
Sbjct 398892 TCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCC 398833
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||| ||| ||| || || |||| || || | ||| || || | || ||
Sbjct 398832 TGTATCTTTGTTTTCAC--AT--TATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGAT 398777
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| ||||| ||||| || || ||||||||
Sbjct 398776 CGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| ||||||||| ||||| || || | | | || | ||
Sbjct 398724 AGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCC 398665
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||| || ||||| || | |||||||||| | || | |||||||||||
Sbjct 398664 TCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCT 398605
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||| ||| || || | || | || | |||||| || | || ||||||
Sbjct 398604 TGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTC 398545
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| ||||| || || || |||||
Sbjct 398544 TTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513
>seq146
Length=1334862
Score = 89.7 bits (98), Expect = 3e-13
Identities = 153/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
||| || |||| ||||| || || ||||||||||| || || | || | | |
Sbjct 1120084 CCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCC 1120025
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| |||| ||| ||||||||||| ||||| ||||| || ||| | || | || || ||
Sbjct 1120024 ATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTT 1119965
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATT-CATTG---GCCTCGACATCAACGG 34937
||| | || ||| ||| || | | |||||| || | | || || || | ||
Sbjct 1119964 GTCTTGGATCTTTGTTTTCAC----GTTGTCGATTGTATCGGAAGATTCCACTTCTAGGG 1119909
Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| ||||| || ||||| || || || ||||||||
Sbjct 1119908 TTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325533048292274
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