Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq25059 95.1 3e-15 seq33590 91.5 4e-14 seq20256 87.8 5e-13 seq25424 80.6 7e-11 seq20865 80.6 7e-11 seq3706 80.6 7e-11 >seq25059 Length=576 Score = 95.1 bits (104), Expect = 3e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 21058 AGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTC 21117 || ||||||| |||||||| ||||||||| || |||| | | ||||| ||| | | |||| Sbjct 355 AGAGATGGCGGCCCCGACACGATTCGAACGTGCGACCTTCCCCTTAGGAGGGGGACGCTC 296 Query 21118 TATCCAGCTGAGCTACGGGGCC 21139 |||||||||||||||||||||| Sbjct 295 TATCCAGCTGAGCTACGGGGCC 274 >seq33590 Length=500 Score = 91.5 bits (100), Expect = 4e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||||||||||||||||||||||||| | ||||||||| ||||||||| Sbjct 454 TGGCGCCCCCGACAGGATTCGAACCTGTGACCCGCGGATTAGAAGGCCGCCGCTCTATCC 395 Query 21123 AGCTGAGCTACGGGG 21137 ||||||||||||||| Sbjct 394 AGCTGAGCTACGGGG 380 >seq20256 Length=637 Score = 87.8 bits (96), Expect = 5e-13 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 37390 GATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCC 37449 ||||| || ||||| || |||| || ||| ||||| |||||||| ||||| ||||| Sbjct 635 GATGCGGACGTGATTGATGAGATTCCGATGGCGTACAAAGACATCGACGCGGTGATGGCG 576 Query 37450 GCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGT 37509 |||||| | ||||||||| | || ||||||| || || |||||||||||||| Sbjct 575 GCGCAACAGGACCTGGTGGAGGTGGTTTACACGCTCAAGCAGGTGGTTTGCGTGAAGGGG 516 Query 37510 TGA 37512 ||| Sbjct 515 TGA 513 >seq25424 Length=577 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21060 TGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTA 21119 || ||||| |||||||||| ||||||||| ||||| ||||||||||| |||||||| Sbjct 230 TGTTGGCGCGCCCGACAGGACTCGAACCTGCAACCGTCGGCTTAGAAGGCCGATGCTCTA 289 Query 21120 TCCAGCTGAGCTACGGG 21136 ||| | |||||||| || Sbjct 290 TCCGGTTGAGCTACAGG 306 >seq20865 Length=629 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||||||||| ||||||||| ||||| ||||||||||| ||||||||||| Sbjct 98 TGGCGCGCCCGACAGGAATCGAACCTGCAACCGTCGGCTTAGAAGGCCGATGCTCTATCC 157 Query 21123 AGCTGAGCTACGGG 21136 | |||||||| || Sbjct 158 GGTTGAGCTACAGG 171 >seq3706 Length=935 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||||||||| ||||||||| ||||| ||||||||||| ||||||||||| Sbjct 262 TGGCGCGCCCGACAGGACTCGAACCTGCAACCGTCGGCTTAGAAGGCCGATGCTCTATCC 203 Query 21123 AGCTGAGCTACGGG 21136 | |||||||| || Sbjct 202 GGTTGAGCTACAGG 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139216633598952