Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq58 100 2e-16 seq146 93.3 3e-14 seq157 86.0 5e-12 >seq1 Length=34941034 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||| | || ||||| ||||| || | ||| || ||| Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| | || || |||||| | || | || || Sbjct 3650080 -GATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCA 3650138 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | ||| ||||||||||| ||||| | || ||| |||| || ||||| Sbjct 3650139 ACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAA 3650198 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || |||||| |||| Sbjct 3650199 CATCCAGAAGGAGTCCACTTTGCACCTGGT 3650228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || ||||| ||||| || | ||| || ||| | Sbjct 3650248 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACACTTGAAGTTGAAAGCTCG 3650307 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || |||||| | || || || || | || | || || Sbjct 3650308 -GATACTATTGACAATGTGAAGGCAAAGATCACAGACAAGGAGGGAATTCCAGCTGACCA 3650366 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | ||||| || ||||||||||| | | || | || ||||| || Sbjct 3650367 GCAGAGACTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGGACTCTAGCTGACTATAA 3650426 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||| || || |||||| |||| Sbjct 3650427 CATTCAAAAGGAATCAACCTTGCACTTGGT 3650456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | |||||||| || | ||| | ||| ||| | Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || ||||| | || || ||| Sbjct 3649852 GACACTATTGAGAACGTCAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 3649911 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||||||||| ||||| | || ||| |||| || || || Sbjct 3649912 CAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAAT 3649971 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || |||||| ||||| Sbjct 3649972 ATCCAGAAGGAGTCCACTTTGCACCTGGTG 3650001 >seq58 Length=2649046 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || ||||| || || ||| | || |||| | | Sbjct 1147155 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACTATCACCTTGGAGGTGGAGAGTTCC 1147214 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | || || || || ||||| ||||| | ||| |||||| Sbjct 1147215 GATACTATCGACAATGTCAAGGCGAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1147274 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 1147275 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGAAGGACTTTGGCTGACTACAAC 1147334 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | || ||||| Sbjct 1147335 ATCCAGAAGGAGTCTACTCTTCATTTGGTG 1147364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || || || || || ||||| || | || ||| ||| | Sbjct 1147383 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCG 1147442 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| ||||| || || | ||| || || Sbjct 1147443 -GACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCA 1147501 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||| ||||| ||||| | | || | ||||| ||||| Sbjct 1147502 GCAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCGGATTACAA 1147561 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||||||||| | ||| ||||| | | ||| | || |||| Sbjct 1147562 TATCCAAAAGGAGTCTACCCTTCACTTGGTGCTTCGTTTGAGGGGAGGAA 1147611 >seq146 Length=1334862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || ||||| |||| || |||||||| ||| | ||| ||| || Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || ||| |||||| || |||||||| | || ||||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || | || |||| || || ||||| |||| || | | ||| | || || ||||| Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || || || ||| | ||| ||||| Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTG 1120078 >seq157 Length=426068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| ||| | ||||| || |||||||| | || ||| ||| | Sbjct 398513 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCG 398572 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || || || | || || || Sbjct 398573 -GATACAATTGACAATGTGAAGGCAAAGATACAAGACAAGGAGGGTATCCCACCAGACCA 398631 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || || ||||| ||||||| ||| |||| || ||||| Sbjct 398632 GCAAAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACATTGGCAGATTACAA 398691 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | ||| | ||| Sbjct 398692 CATCCAGAAGGAGTCTACCCTTCACCTTGTG 398722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398681151677494