Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq157 98.7 2e-15 seq57 89.7 8e-13 >seq157 Length=426068 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||||| || || ||||| |||| || ||| | Sbjct 398058 TGCAAATCTTTGTCAAAACCCTAACAGGGAAGACCATTACCCTTGAGGTTGAAAGCTCTG 398117 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || |||||| ||| || ||||| |||||||| || |||| Sbjct 398118 ACACCATTGACAATGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCAGACCAAC 398177 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || |||||| | || ||| | | || || | |||||||||| Sbjct 398178 AGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTCTAGCTGATTATAATA 398237 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || || |||| Sbjct 398238 TCCAGAAGGAGTCTACCCTCCA 398259 >seq57 Length=33024243 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || ||||| || || | || || ||| || Sbjct 18658457 TGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCCTCCG 18658398 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| ||||||||||||||||| || |||| Sbjct 18658397 ACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAAC 18658338 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || || |||||| | || ||| | | || | | ||||| || | Sbjct 18658337 AACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTACAACA 18658278 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| |||||| Sbjct 18658277 TCCAGAAAGAGTCGACT 18658261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785770899338320