Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq20944 93.3 2e-14 seq34964 87.8 7e-13 seq159 87.8 7e-13 seq56 82.4 3e-11 >seq20944 Length=626 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 || ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| ||||||| Sbjct 504 GTTTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTA 445 Query 50165 CCGAACTGCTCTACTCCGC 50183 ||| |||||| || |||| Sbjct 444 CCGGGCTGCTCCACCCCGC 426 >seq34964 Length=1610 Score = 87.8 bits (96), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 491 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 550 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 551 TGCTCTACCCCGC 563 >seq159 Length=432747 Score = 87.8 bits (96), Expect = 7e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 322738 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 322679 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 322678 TGCTCTACCCCGC 322666 >seq56 Length=649304 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | | ||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 539418 TTGCGGAGACAGTATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 539359 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 539358 TGCTCTACCCCGC 539346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181516407971652