Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023566.1 Length=56024 Score E Sequences producing significant alignments: (Bits) Value seq1167 174 6e-39 >seq1167 Length=7850 Score = 174 bits (192), Expect = 6e-39 Identities = 384/575 (67%), Gaps = 27/575 (5%) Strand=Plus/Plus Query 610 GGTGAAAGCGGCGATAACATCGGTCGCGGCGGTCGAAAATCGATGTATTTTAAGGATGAA 669 |||||||||||||| |||||||| || || || |||| |||||||| |||||||| Sbjct 7 GGTGAAAGCGGCGACAACATCGGACGTGGTGGCCGAACGAAAATGTATTTCAAGGATGAG 66 Query 670 AGCGCGCATTATGAACGACCTGAAAAGATAGAAGCGGCGCTTGGTGACAATACACGCGTC 729 |||||||||||||| ||||| ||| || |||| || || | ||| || || || | Sbjct 67 AGCGCGCATTATGAGCGACCCGAACTCATTCAAGCCGCACTCGATGATAACACCCGAATT 126 Query 730 CAGGTCGATATATCGTCTGTGAATGGTCTGAATAATCCGTTTTATCGCAGACGTGAAGCC 789 ||||||||||||||| ||||| || || |||| |||| | || | ||| ||||| Sbjct 127 CAGGTCGATATATCGAGCGTGAACGGGTTGGGTAATGTGTTTCACCGTAAACGCGAAGCT 186 Query 790 GGGCAAATTTGGACGCCATCGAATGATAATGATCCTGGATATACGCGGATATTCATCATT 849 || |||| || | || | || || || || ||||| | || | | Sbjct 187 GGTATCGATTGGCCG-------AAGACA--GAACCGGGTTACACGCGCGTCTTTGTTCTC 237 Query 850 GATTGGCGCGATCATCCGGAGAAGACGCAACAATGGTACGATGAACGCAAAGCCAAACAT 909 |||||| |||||||| || ||||||| ||||| | || |||| ||| ||| Sbjct 238 GATTGGTCGGATCATCCCGACAAGACGCCTGAATGGCATGAACAACGTCGAGCGAAAGCC 297 Query 910 GAACGTGAAGGCTTGTTGCATATCTTCGCGCAAGAAGTTGACCGCAATTATAGCGCGGCG 969 |||||||||||| ||||||| | ||||||||||| || || ||||| ||| ||| | Sbjct 298 GAACGTGAAGGCATGTTGCACAAGTTCGCGCAAGAGGTCGAGCGCAACTATTCCGCATCC 357 Query 970 ATCAGCAACACAATTATTCCATATGAATACATCGTTGCCGCTGTTGACGCACATTTAAAA 1029 | | || |||| | |||| ||| |||||||| || || ||| |||| Sbjct 358 CTGTCCGGAACTGTTATAGCGATGGAATGGATCATTGCCGCTCGGGATGCTCATCTAAAG 417 Query 1030 CTGCCGGTTCTAATGCGCCGTCCGGATGACATACCGGATACATGGATGGCAGGGCTTGAC 1089 | || | |||| | || ||| ||| ||| || ||| ||||| Sbjct 418 ATCCCAG---GAATGGACGGT--GGA--------CGGCGACACGG-----CGGGTTTGAC 459 Query 1090 GTTGCGGACGGCGGTATAGACCGCAACGCATTGGCCAAGCGTCAATGGGTGATATTGCGT 1149 |||||||||| ||| ||| |||||| | | | | | | ||||||||||| Sbjct 460 GTTGCGGACGAAGGTGGCGACACCAACGCGCTCTCAGACATTGACGGCGTGATATTGCGA 519 Query 1150 CACGTTGAAGAATGGGGTGAACGCGATCCTGGTGT 1184 || ||||| |||||||| | || ||||| || || Sbjct 520 CATGTTGAGGAATGGGGCGCGCGAGATCCGGGCGT 554 Score = 138 bits (152), Expect = 4e-28 Identities = 307/452 (68%), Gaps = 19/452 (4%) Strand=Plus/Plus Query 5554 AATGCTTCCCGCGCTTACGGTACGGCTGGCACAACGCCTTTCGGCACCAACCACGGTGAA 5613 || || |||||||| ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4885 AACGCATCCCGCGCGACCGGCACGGCCGGCACGACACCGTTTGCGACCGACCACGGCATC 4944 Query 5614 ACGGCACAAGTCCGCAAAATCCTGGACGACAACGGCGCTCCGCTTTCCGAAC---GCTCG 5670 || || | | || ||||| || || ||||||||||| || | | | || | || Sbjct 4945 ACCGCCGACATGCGGAAAATTCTCGATGACAACGGCGCACCCC---CAGGACTTCGTTCC 5001 Query 5671 CTTGTTATCGACACTTCGGCGGGCGCTGCAC-TCCGCACGCTTTCCAATCTGACGAAGGT 5729 | | |||| ||| | || ||||| | || | |||| ||| || || ||| ||||| Sbjct 5002 ATGATCATCGGCACGACAGCCGGCGC-GAACATGCGCAAGCTCTCGAACCTGTTCAAGGT 5060 Query 5730 CAACGAAGCTGGAACGCAGATGACGCTTCGCGACGGTGAG-TTGCTGAACCTGAACGGGC 5788 |||||||| || || | |||||||| || |||||||| |||| || || |||||| Sbjct 5061 GAACGAAGCCGGCACCGACATGACGCTGCGAGACGGTGAACTTGCC-AATCTCAACGGGT 5119 Query 5789 TTTCGATCAAGGAAAG------CGCGGGCGTGC-AGCAGTTCACGGC--GGGTACTGGCG 5839 |||||||||||||||| ||| | | ||| || | |||| | ||| || |||| Sbjct 5120 TTTCGATCAAGGAAAGCGGCGCCGCTGTCATGCGTGCCGGTCACACCAAGGGCACGGGCG 5179 Query 5840 CGTCTTCAACGACCAACGCCGCAGGTTATGCCATCGGTGCGACCGTCATCACACTGGCGT 5899 || | ||| |||| ||| |||||||| |||| || |||||| | || || |||| Sbjct 5180 CGACGGTCACGGTCAACAACGCCGGTTATGCTGTCGGCGCAACCGTCCTAACGCTCGCGT 5239 Query 5900 CTGCCGGCACTGGTGTCATCAAGGCAGGTGATGTTATCACCTTTGCCGGTGACGCCAACA 5959 | |||||||| || | ||||| || || || | || | || || || | | | Sbjct 5240 CGGCCGGCACGGGCACGGTGAAGGCTGGCGACGTGGTGACGCTCGCGGGCGATACGACGA 5299 Query 5960 AATACGTTGTCAAAAGCGGTGACACTGACGTT 5991 | |||||||| | || |||||||| ||| Sbjct 5300 AGTACGTTGTTGCATCGGGCGACACTGATGTT 5331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179069577922872