Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq29981 87.8 2e-12 seq25624 87.8 2e-12 seq23136 86.0 6e-12 seq32734 84.2 2e-11 >seq29981 Length=526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 ||||| |||||||| ||||||||||| ||||||||||||||| |||| |||||||||| Sbjct 58 GCTGGTTTAGCTCAATTGGTAGAGCAGCTGATTTGTAATCAGCAGGTTGCGGGTTCGAGT 117 Query 148194 CCTGCATCCAGCACCAGA 148211 || | ||||| ||||| Sbjct 118 CCCATAACCAGCTCCAGA 135 >seq25624 Length=570 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || |||||||||||||||||||| ||||||||||||||| || | |||||||||| Sbjct 78 GCCGGCTTAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGCCACGGGTTCGAAT 19 Query 148194 CCTGCATCCAGCACCA 148209 |||| | || |||||| Sbjct 18 CCTGTAGCCGGCACCA 3 >seq23136 Length=596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 148133 TGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAA 148192 ||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct 423 TGCTGACTTAGCTCAATTGGTAGAGCAACTGATTTGTAATCAGTAGGTTGCGGGTTCGAG 482 Query 148193 CCCTGCATCCAGCACCA 148209 || | |||||||| Sbjct 483 TCCCATAGTCAGCACCA 499 >seq32734 Length=509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 148141 TAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCAT 148200 ||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||| Sbjct 411 TAGCTCAGTTGGTAGAGCAGCTGATTTGTAATCAGCAGGTCCCGGGTTCGATTCCTGGTG 352 Query 148201 CCAGCACCA 148209 || |||||| Sbjct 351 CCGGCACCA 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485784291061440