Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq58 107 2e-18 seq157 104 2e-17 seq57 102 8e-17 >seq1 Length=34941034 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAGCTGCTTG 133520 |||||||| ||||| ||||| |||||| ||| || || | | ||||| ||||| || Sbjct 3649988 GTGGACTCCTTCTGGATATTATAATCGGCCAATGTCCTG--CCA-TCCTCAAGCTGTTTA 3649932 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | ||||||| ||||||||| || ||||| ||||||||||| ||||| | Sbjct 3649931 CCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTAGTC 3649872 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| | ||| || || | ||| || || ||||| || || Sbjct 3649871 TTGACGTTCTCAATAGTGTCAGAACTCTCAACTTCCAAGGTTACTGTCTTGCCTGTGAGG 3649812 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||| Sbjct 3649811 GTTTTAACAAAGATCTGCAT 3649792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAGCTGCTTG 133520 |||||||| ||||| || |||||||| ||| || || | | ||||| ||||| || Sbjct 3650216 GTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTG--CCA-TCCTCAAGCTGTTTA 3650160 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | ||||| | ||| ||||| | || |||||||||||||| || ||||| | Sbjct 3650159 CCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTAATCTTCGCC 3650100 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| || || | | || || || | |||| ||| ||||| || ||| Sbjct 3650099 TTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTCTTGCCAGTAAGA 3650040 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 || || || || ||||||||| || Sbjct 3650039 GTCTTCACAAAGATCTGCATGCCT 3650016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| ||||||||||| ||| || | ||||| | |||||| || Sbjct 3650673 GGTCGACTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGCTTCCC 3650614 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| | |||||| || |||||||| ||||||||||| ||||| ||| Sbjct 3650613 AGCAAAGATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTGGTCTT 3650554 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | |||||| || | ||||| || || || || || || Sbjct 3650553 CACATTATCAATTGTATCAGAACTCTCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT 3650494 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3650493 CTTCACAAAGATCTGCAT 3650476 >seq58 Length=2649046 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||||||| | | || | ||| ||||||||||| || Sbjct 1146895 GTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCA 1146836 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 ||| | || |||| |||||||| || || |||||||||||||| ||| ||| || || Sbjct 1146835 GCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATTTTGGCTTT 1146777 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || |||| || || || | ||||| || ||||| || ||||| Sbjct 1146776 GACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGT 1146717 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1146716 CTTGACGAAGATCTGCAT 1146699 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| || || ||||||||||| | | || | ||||| ||| Sbjct 1147588 AAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCAAGC 1147529 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| | || ||||||||| || || || || ||||| || |||| Sbjct 1147528 TGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGGATC 1147469 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | |||||| | | ||| || || | |||| ||| || ||| Sbjct 1147468 TTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCG 1147409 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 1147408 GTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || ||||| ||||||||||| ||| || | | | || ||||| Sbjct 1147132 AAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCA-TCTTCGAG 1147074 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| ||||| || ||||||||||| || Sbjct 1147073 CTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAAT 1147014 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | | || || || | || | || || || Sbjct 1147013 CTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTCTTCCC 1146954 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || || || ||||| Sbjct 1146953 GGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| ||||| || ||||| || ||| || ||||| ||| Sbjct 1147360 AAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTCAAGC 1147301 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || |||||| || || || || |||||||| || ||| Sbjct 1147300 TGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATT 1147241 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | || |||| |||||| || | ||||| || ||||| Sbjct 1147240 TTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACCTCCAAGGTGATAGTCTTGCCA 1147181 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 1147180 GTCAATGTCTTGACAAAAATCTGCAT 1147155 >seq157 Length=426068 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || |||||||| ||| || |||| ||||||||||||||| Sbjct 398710 GGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGT--ACGACCGTCCTCGAGCTGCTTT 398653 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || |||| |||||||| || ||||| || |||||||| |||||| | Sbjct 398652 CCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGTATCTTTGCC 398593 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| || || | | ||| || || | || | ||| || || || ||| Sbjct 398592 TTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCTGTGAGA 398533 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| Sbjct 398532 GTCTTGACGAAAATTTGCAT 398513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || || ||||| | | || ||| | || || | || Sbjct 398944 ATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCA-TCTTCCAACT 398886 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || |||| |||| |||||| || |||||||| ||||||||||| |||| Sbjct 398885 GCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCT 398826 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || || | | |||| || || | | |||||| || | |||| || || || | Sbjct 398825 TTGTTTTCACATTATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAG 398766 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || |||||||||||||| Sbjct 398765 TGAGAGTCTTCACGAAAATCTGCAT 398741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || ||||||||||| ||| || ||| | ||||| || Sbjct 398490 AAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCA-TCCTCAAG 398432 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||||| ||| || || || ||||| ||||||||||| || Sbjct 398431 TTGCTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGTAT 398372 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||| || | | ||| || || | || | ||| || || Sbjct 398371 CTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTTCC 398312 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| Sbjct 398311 AGTGAGAGTCTTGACAAAGATTTGCAT 398285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| ||||||||||| | | | | | | | || ||||| | Sbjct 398032 ATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCA-TCTTCGAGTT 397974 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || || |||||||| ||||| ||||| |||||||| |||| Sbjct 397973 GCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCT 397914 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | |||| || || | |||||| |||| |||| || || || | Sbjct 397913 TTGCCTTAACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAG 397854 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || ||||| Sbjct 397853 TCAAGGTCTTAACAAAGATTTGCAT 397829 >seq57 Length=33024243 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | | ||| ||| | || || || || || || Sbjct 18658262 GTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCA-TCTTCAAGTTGTTTTCC 18658320 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || || ||||| || || |||||||| ||||| ||||||| || Sbjct 18658321 GGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTT 18658380 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| || || || || | ||| | |||||| || || || || Sbjct 18658381 CACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 18658440 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 18658441 TTTCACGAAGATCTGCAT 18658458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483177603081040