Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq127 113 1e-19 >seq127 Length=60962716 Score = 113 bits (124), Expect = 1e-19 Identities = 276/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || ||||||||| ||||||| |||||||| ||||| |||||| | || ||||||||| Sbjct 5747078 GCGTTTGCTTGTATTGAAGGGATATTCTTCTCAGGAAGTTTCTGCTCCATTTTTTGGCTT 5747019 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 ||||||||||| | ||||| || | | || || ||| |||| ||||| |||| ||| Sbjct 5747018 AAGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTCGAATGAATTGATCTCTCGAGACGAA 5746959 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG----ATAAACTTGA 132042 | | | ||| ||| |||||| ||| | ||| || ||| || | || | | Sbjct 5746958 GGACTTCATTGTGATTTTGCTTGTTTATTGTATGGA----TTGTTGAAGAAGAAGCCGAA 5746903 Query 132043 TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTAC 132102 ||| | || | | | | | || |||||||| || |||| ||| ||| | Sbjct 5746902 TGAGGAGAAAGTGCAGGGGATAGTGAAAGATGCAGTTGAAATTGAGAGGGAATTTGTGTG 5746843 Query 132103 AGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATT 132160 || || ||||| |||| |||| | |||||||| ||| | |||| |||| ||| Sbjct 5746842 TGATGCATTGCCTGTTGC--TTTGGTAGGGATGAACTGTGAGTTGATGAGTCAGTATATT 5746785 Query 132161 GAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAA 132220 || || ||||||||| | || | ||||| | | |||||||| | Sbjct 5746784 GAGTTTGTTGCTGATAGATTGTTGGCTGCGCTTGGTTGTGGGAAGATTTACGGCGTGTCG 5746725 Query 132221 AACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 || || | | |||||||||| ||||| ||| |||| || || || ||||| || Sbjct 5746724 AATCCGTTTGATTGGATGGAGTTGATTTCTCTTCAAGGGAAGACTAATTTCTTTGA 5746669 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| || | || || || ||| | ||||| || ||||||||| Sbjct 57119588 AGGCATTTGAATGATGGAGACTTTGTGCTTTTTAATCGACAACCCAGTCTTCATAAAATG 57119529 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAA 305423 || || |||| ||| | | | |||| ||||| | ||| ||||| ||||| ||| | Sbjct 57119528 TCCATCATGGGTCACAGAAT-AAAG-ATTATGCCCTATTCCACATTCCGATTGAATCTGT 57119471 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | ||||| ||||| ||||| ||||| ||||||||||| |||||||| |||| Sbjct 57119470 CTGTTACATCACCTTACAATGCTGATTTCGATGGTGATGAAATGAACATGCATGTTCCTC 57119411 Query 305484 AATC 305487 |||| Sbjct 57119410 AATC 57119407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186200817754406