Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq57 141 6e-29 seq146 120 2e-22 seq1 114 8e-21 seq58 100 2e-16 seq180 93.3 3e-14 seq170 89.7 3e-13 seq157 87.8 1e-12 seq145 87.8 1e-12 >seq57 Length=33024243 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||||| ||| | || | || ||||| |||||| || ||||||||||| | Sbjct 18658230 CACCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAG 18658289 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||||| | || || | |||||||||||| ||||||| ||| || || ||| | | Sbjct 18658290 CAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTG 18658349 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || || || || |||| ||| | ||||||| ||||| Sbjct 18658350 GAATGCCTTCTTTGTCTTGGATCTT-TGCTTTCACATTGTCGATGGTGTCGGAGGATTCG 18658408 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 18658409 ACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq146 Length=1334862 Score = 120 bits (132), Expect = 2e-22 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | | | || |||||| || || || ||||| || |||||||| Sbjct 1120101 ATCGT-ACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTA 1120043 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 ||| | ||| || | | | || ||||||||||||||||| ||||||| || || ||||| Sbjct 1120042 ATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATC 1119983 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTG 33694 | | || | ||||||||||| || || ||||| || | ||| | || ||| | Sbjct 1119982 TGGTGGAATTCCTTCTTTGTCTTGGATCTT-TGTTTTCACGTTGTCGATTGTATCGGAAG 1119924 Query 33695 ATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||| || | || || ||||| || |||| ||||| || || |||||||| Sbjct 1119923 ATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 114 bits (126), Expect = 8e-21 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || || || | ||||| || || ||| ||| ||||| ||||||||||| | Sbjct 3649791 ACCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGC 3649732 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||||||| ||||||||||| || | | ||||| ||| | || Sbjct 3649731 TAGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGG 3649672 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || | |||||| ||| | ||||| ||| | ||||| ||| || Sbjct 3649671 GATACCCTCCTTATCAGTAATTTT-TGTCTTAACATTGTCAATAGTGTCTGAGCT---TT 3649616 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || || || || | || || |||||||||||||| Sbjct 3649615 CGACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 >seq58 Length=2649046 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| ||||| | || | ||| ||||| ||| ||||| |||||||| |||| Sbjct 1146698 ACCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGC 1146639 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | ||||||||||||||| || ||||| || |||||| | || Sbjct 1146638 GAGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGG 1146579 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 1146578 AATTCCTTCCTTGTC 1146564 >seq180 Length=370853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||| | ||| | || | || ||||| |||||| || ||||||||||| | Sbjct 23747 CACCACCTCTGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAG 23688 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||||| | || || | |||||||||||| ||||||| ||| || || | | | | Sbjct 23687 CAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTG 23628 Query 33641 GCACACCTTCTTTGTC 33656 | | ||||||||||| Sbjct 23627 GAATGCCTTCTTTGTC 23612 >seq170 Length=38796167 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||||||| || | ||||| || ||||||||||| ||| || | | | || Sbjct 3261153 AACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACGAGAGTTCTTCCATCT 3261212 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 ||||||||||||| ||| ||||||| || || |||||| | | | ||||| ||||| Sbjct 3261213 TCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAAATTCCTTCCTTGTCT 3261272 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || ||||| || | ||| | | ||| ||||| || || | || || || Sbjct 3261273 TGGATCTT-TGTTTTCACGTTGTCGATTATATCGAAAGATTCGACTTCTAGGGTTATGGT 3261331 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | |||| ||||| || || |||||||| Sbjct 3261332 TTTTCTAGTTACGGTTTTCACGAAAATCTGCAT 3261364 >seq157 Length=426068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 33512 TAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGT 33571 |||||| |||||||| | || ||| | || | ||| || || || || || |||| Sbjct 398976 TAAAAT--TCACCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGT 398919 Query 33572 TGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCT 33631 | ||||| | ||| || || | || ||||| || || ||||||||||||| | ||||| Sbjct 398918 TATAATCAGCGAGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCT 398859 Query 33632 GATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCG 33690 ||||| | || | ||||| ||||| || || ||||| |||| || | || || Sbjct 398858 GATCTGGAGGGATCCCTTCCTTGTCCTGTATCTT-TGTTTTCACATTATCAATAGTATC- 398801 Query 33691 CTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | | ||||| || | |||||||| || || || | || || || || |||||||| Sbjct 398800 CGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq145 Length=44152522 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||| | ||| | || | || ||||| |||||| || ||||||||||| | Sbjct 33200776 CACCACCTCTGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAG 33200717 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||||| | || || | |||||||||||| ||||||| ||| || || | | | | Sbjct 33200716 CAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTG 33200657 Query 33641 GCACACCTTCTTTGTC 33656 | | |||||||| || Sbjct 33200656 GAATGCCTTCTTTATC 33200641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328542771304320