Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq30224 140 3e-28 seq21662 109 5e-19 >seq30224 Length=530 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| ||||||| ||| |||| |||| ||| || || || ||| | || |||||| Sbjct 222 TTCGGCCATCAGACGCGCCACAATTTGGCCGCAGGATTCCCGCTGCTCACGACCAAGAAG 281 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || || || |||||||| |||||| || |||||||| | |||||||| |||||| Sbjct 282 CTATCCCTCAAATCGATCATTCACGAACTGCTCTGGTTCCTGAGGGGCGATACCAACATC 341 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 |||||||| | || ||| |||| ||||||||| || ||||| |||| |||||| || Sbjct 342 AAGTATCTCAAGGACCACGGCGTCTCGATCTGGGACGAGTGGGCGGATGAGAATGGCGAC 401 Query 142423 CTCGGACCTGTCTACGG 142439 ||||| || ||||| || Sbjct 402 CTCGGTCCGGTCTATGG 418 >seq21662 Length=620 Score = 109 bits (120), Expect = 5e-19 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 148819 CGTGATCAGCTGCGCGGTTTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACG 148878 || || || || |||| || |||||||| || |||||||| |||||||| Sbjct 125 CGCGACCAACTCCGCGCCTTTATCGAGCGCATCGAACGTCTGGAAGAAGAAAAGAAGACC 66 Query 148879 ATCGGCGATGACATCAAGGACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAG 148938 |||| ||| ||||||||||||||||||||||| |||||| | | ||||||||||||||| Sbjct 65 ATCGCCGACGACATCAAGGACGTCTACGGCGAAGCCAAAAGCATGGGCTTCGACACCAAG 6 Query 148939 ATC 148941 ||| Sbjct 5 ATC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500247411364960