Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq157 104 2e-17 seq146 93.3 4e-14 seq57 89.7 5e-13 seq58 84.2 2e-11 >seq157 Length=426068 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||| | ||| | | |||| || || |||||||| || || | ||| Sbjct 398962 ACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCGAGGGT 398903 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| ||||||| | | || || | ||| ||||||||||| || || Sbjct 398902 ACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCC 398843 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||| ||||| | || | |||||| | |||||| || | Sbjct 398842 TTCCTTGTCCTGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCACCTCCAG 398783 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||| ||||| || | |||||||||||| Sbjct 398782 AGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq146 Length=1334862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||| ||||| ||||||||||| || | || | |||||| Sbjct 1120077 ACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCATCTTCC 1120018 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| |||| | || || || ||||||||||| || || |||||||| || Sbjct 1120017 AATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 1119958 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||||| | || | ||||||| | |||||||| | || | ||||| Sbjct 1119957 ATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTTATGGTTTTT 1119898 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||||||||| Sbjct 1119897 CCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq57 Length=33024243 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||| || | || || |||||| || ||||| |||| Sbjct 18658265 GACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCG 18658324 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| ||||| ||||| || ||||||||||| || || ||| ||||| Sbjct 18658325 AAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACA 18658384 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || ||||| | || | |||||||| || || ||||| Sbjct 18658385 TTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 18658444 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 18658445 ACGAAGATCTGCAT 18658458 >seq58 Length=2649046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| |||||||||||| | || || ||||| || ||||| |||| Sbjct 1146666 TTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCGG 1146607 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||||| ||| |||||||||||||| || ||||| || || || ||| || | Sbjct 1146606 CAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTTA 1146547 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| || | || || || || || |||| Sbjct 1146546 CGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTTT 1146487 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 1146486 TCACGAAGATTTGCAT 1146471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476371428820560