Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq146 100 2e-16 seq170 82.4 6e-11 >seq146 Length=1334862 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| ||||| || ||||| | ||||| || ||||| ||| | ||| ||| | Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | | | | | |||||| ||| || ||||||||||| | || ||||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | || |||| || || |||||||| |||||| | |||| | | |||||||| Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || |||||||| || || || || || | ||| | || || || Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGG 1120095 >seq170 Length=38796167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| ||||| || ||||| | ||| | || ||||| ||| | ||| ||| | Sbjct 3261367 AAAATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGAATCT 3261308 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| | | | | |||||| ||| || ||||| ||||| | | ||| Sbjct 3261307 TTCGATATAATCGACAACGTGAAAACAAAGATCCAAGACAAGGAAGGAATTTCACCAGAT 3261248 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | || |||| || | |||||||| |||||| | |||| | | |||||| Sbjct 3261247 CAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAGATTAC 3261188 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || ||||||| | || ||||| || || ||| | || || || Sbjct 3261187 AACATTCAGAAAGAATTGAAGCTTCATTTGGTGTTCAGGCTTCGTGGTGG 3261138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402132258085568