Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq127 239 6e-57 >seq127 Length=60962716 Score = 239 bits (264), Expect = 6e-57 Identities = 392/560 (70%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || |||| | || |||||||||||| |||||| |||| || || ||| Sbjct 5747509 TGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAG-CCGAAGCATCGTTT 5747451 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| || |||| | ||||||| | || | | Sbjct 5747450 TGGACGGCTGAAGAAGTCGATCTATCATCCGATTTAGGTCACTGGGAAACCCTAACTTCC 5747391 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||||| |||||||| | ||||| |||||||| || |||||| ||||| ||||| Sbjct 5747390 GACGAGAAACATTTCATTACACACGTTCTCGCCTTCTT-CGCCGCATCAGATGGAATCGT 5747332 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 | || || || || || || |||||||||||||| ||| | | || || || || Sbjct 5747331 GCTGGAAAATCTCGCAGGTCGGTTTATGAAAGAGGTGCAAGTCGCTGAAGCGCGCGCATT 5747272 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 |||||| || || |||||||| |||||||| || ||||||| ||||| ||||| | || Sbjct 5747271 TTACGGTTTTCAAATCGCCATTGAAAACATTCATTCTGAAATGTACTCACTCCTTTTAGA 5747212 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 || ||| | ||||| | | | || ||||||||||| || ||||| || ||||| Sbjct 5747211 AACTTACATTAAGGATTCATCCCAAAAATCTCACCTCTTTCGAGCAATCGAAACCGTGCC 5747152 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | |||| || ||||| || ||||| ||| |||||| | ||| || | Sbjct 5747151 CTGTGTGAAAAAGAAGGCTGATTGGGCACTGAGGTGGAT-----TGATGGGTCTGAATCA 5747097 Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 ||||| ||| || | | | ||||| | | || || || || ||||| || |||||| Sbjct 5747096 TTTGCAGAGAGGATAATTGCGTTTGCTTGTATTGAAGGGATATTCTTCTCAGGAAGTTTC 5747037 Query 1456232 TGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||| |||| |||||||| |||||||| || || ||||| ||| | | ||| | || || Sbjct 5747036 TGCTCCATTTTTTGGCTTAAGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTCG-AATGA 5746978 Query 1456292 ATTTATCAGTCGCGACGAAG 1456311 ||| ||| ||| ||||||| Sbjct 5746977 ATTGATCTCTCGAGACGAAG 5746958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173929399327852