Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq58 132 4e-26 seq1 95.1 1e-14 seq146 91.5 1e-13 seq157 87.8 2e-12 seq57 86.0 6e-12 >seq58 Length=2649046 Score = 132 bits (146), Expect = 4e-26 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| ||||||||| || |||||||| || | || | | | || || Sbjct 1147592 CACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTC 1147533 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||| ||||||| ||||||||| | |||| | |||||| ||| Sbjct 1147532 AAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 1147473 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 ||||||| ||| | | | | | |||||| |||| || ||||||| ||||| || Sbjct 1147472 GATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTC---TCAACCTCCAAAGTGATGGT 1147416 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || |||||||| |||||||| Sbjct 1147415 CTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 131 bits (144), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| ||||| || || | || || || ||||| || ||||| Sbjct 1147802 CTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAA 1147743 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | |||| | |||||| ||| ||||| ||||| | | Sbjct 1147742 GATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATT 1147683 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| ||| ||| ||||||| ||||| ||||| || ||||| || || Sbjct 1147682 ATCAATCGTGTCCGAGCT---TTCAACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTT 1147626 Query 35722 CACAAATATCTGCATTC 35738 ||||| |||||||||| Sbjct 1147625 AACAAAGATCTGCATTC 1147609 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || || |||||||| ||||| || || | || || Sbjct 1147135 ACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCATCTTCG 1147076 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| ||||||| ||||||||| | ||||| | ||||||||| Sbjct 1147075 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 1147016 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||| || ||| ||| || |||| || ||||| Sbjct 1147015 ATCTTAGCCTTAACATTGTCGATCGTATCCGAGCT---TTCAACTTCCAAAGTAATCGTC 1146959 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||| |||||||| || ||||| Sbjct 1146958 TTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | ||| |||||| || |||||||| || ||||| || | | || || Sbjct 1147364 CACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTC 1147305 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| || || ||||||| |||||| || | |||| | ||||| ||| Sbjct 1147304 AAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTG 1147245 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCG---CTCGATTCCACCTCCACCGTGATCGT 35703 ||| || ||| | | | | | || ||| ||| |||||||||| ||||| || Sbjct 1147244 GATTTTCGCCTTGACATTGTCGATAGTATCGGAACTC---TCCACCTCCAAGGTGATAGT 1147188 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || ||||| |||||||| Sbjct 1147187 CTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||||||||| | ||||||| |||| || |||||||| || || || Sbjct 1146890 CTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAA 1146831 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||| | |||| || ||||||| | ||| ||| |||| || Sbjct 1146830 GATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATTTTGGCTTTGACGT 1146772 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| ||| || || | ||||| || || || || | ||| || | Sbjct 1146771 TGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGA 1146712 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 1146711 CGAAGATCTGCAT 1146699 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||||||||||| || || || | || || | || ||| Sbjct 3650456 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCCTCC 3650397 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| ||||| || || | | ||||||||| | |||| | ||||||||| || Sbjct 3650396 AGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCTGTG 3650337 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 |||||| ||||| | | | | || || ||| ||| || || | ||||| || Sbjct 3650336 ATCTTTGCCTTCACATTGTCAATAGTATCCGAGCT---TTCAACTTCAAGTGTGATGGTC 3650280 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||| ||||| || |||||||| Sbjct 3650279 TTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| ||||| || | | || || ||||| ||||| ||||| Sbjct 3650211 CTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAA 3650152 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | ||| ||||| | |||| || |||||||| | ||||| ||||| | | Sbjct 3650151 GATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATT 3650092 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || ||| ||| || |||| ||||| || || || || | ||| || Sbjct 3650091 GTCAATGGTATCTGAGCT---TTCAACTTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTT 3650035 Query 35722 CACAAATATCTGCAT 35736 |||||| |||||||| Sbjct 3650034 CACAAAGATCTGCAT 3650020 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||||| |||||||| || || || || | | || ||| Sbjct 3649544 ACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTCC 3649485 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || || || ||||| |||| || |||||| || | |||| | |||||||||| | Sbjct 3649484 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGG 3649425 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| |||| || || || | || || || Sbjct 3649424 ATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTC---TCGACTTCGAGAGTAATAGTC 3649368 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | |||||||||||| || ||||| Sbjct 3649367 TTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 >seq146 Length=1334862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | ||| || || |||||||||||||| || Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| || || || || || |||| || || || || | ||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCAC 35688 | | || ||||| ||||||| |||| |||| | | || ||| |||||||| Sbjct 1119975 ATTCCTTCTTTGTCTTGGATCTTTGTTTTCAC-GTTGTCGATTGTATCGGAAGATTCCAC 1119917 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | || || ||||| || || | |||||||| || |||||||||||| Sbjct 1119916 TTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATTCTG 1119865 >seq157 Length=426068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| ||||| || || |||| || |||||||| || ||||| Sbjct 398704 CTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAA 398645 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | || | | ||||||||| |||||| ||||| | | Sbjct 398644 GATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGTATCTTTGCCTTCACATT 398585 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || |||| || ||||||| || || || || || || | ||| || Sbjct 398584 GTCAATTGTATCCGAGCTC---TCGACCTCCAAAGTAATGGTCTTTCCTGTGAGAGTCTT 398528 Query 35722 CACAAATATCTGCAT 35736 || || || ||||| Sbjct 398527 GACGAAAATTTGCAT 398513 >seq57 Length=33024243 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| || | || || | || || || || || || || || Sbjct 18658267 CTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 18658326 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || || ||||| | |||| || || ||||| ||||||| |||| | | Sbjct 18658327 AATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATT 18658386 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||||| || || | || || ||||||||||| | |||||||| Sbjct 18658387 GTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 18658446 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 18658447 GAAGATCTGCAT 18658458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450566817009680