Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq57 140 3e-28 seq146 129 6e-25 seq58 125 7e-24 seq1 107 2e-18 seq157 100 3e-16 seq170 87.8 2e-12 seq180 86.0 6e-12 seq145 86.0 6e-12 >seq57 Length=33024243 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || ||||| || || || || || || |||||||| || || Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || ||||| || || ||||||| ||| || || || || || Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || ||| ||| || ||| | |||||||| ||||| || Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGACT 18658411 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||||||||| |||| ||||| ||||| || ||||| || Sbjct 18658412 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 18658461 >seq146 Length=1334862 Score = 129 bits (142), Expect = 6e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGT 134562 ||| | ||| ||||| ||||| || ||||||||||| || || | | | | | || | Sbjct 1120078 CACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCA-TCTT 1120020 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 | | ||||| || || ||||||| || || ||||| || || || |||||||| |||| Sbjct 1120019 CCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTT 1119960 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | || ||| ||| || ||| | ||| ||||| |||||||| || || || ||||||| Sbjct 1119959 GGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTTATGGTTT 1119900 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || |||| ||||| |||||||| |||||| || Sbjct 1119899 TTCCAGTTAGGGTTTTCACGAAAATCTGCATTCTG 1119865 >seq58 Length=2649046 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || || || || || || |||||||| |||||||||||| | Sbjct 1146697 CCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1146638 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || ||||| || ||||| || ||||| || ||||| || || Sbjct 1146637 AGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGA 1146578 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||| || || ||| | |||||||| || || Sbjct 1146577 ATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACC 1146518 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| | ||||| ||||| |||||||| Sbjct 1146517 TCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | ||| ||||| || || || ||||| || || ||||| ||| | Sbjct 1146925 CCACCCCTAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCG 1146866 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || |||| | ||||| || || || Sbjct 1146865 AGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGA 1146806 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||||||||| |||||| ||| | || ||||| ||| || Sbjct 1146805 ATGCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTGTCGATAGTATCGGAACTTTCGACT 1146746 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | ||| || ||||| || ||||| Sbjct 1146745 TCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 1146699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| || | || | ||| | ||| || || || |||||||| || ||||| || Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| || || || ||||| || || ||||||||||| | |||||| || || | Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || ||| ||||| ||| | ||||| || || | Sbjct 1147491 GAATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAA 1147432 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||| ||||| || ||||| || || || || ||||| ||||| Sbjct 1147431 CCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||| || || ||||| || ||||| || | || |||||||| Sbjct 1147129 TGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAA-AGTACGGCCATCTTCGAGCTG 1147071 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| ||||| | |||||| || || || || ||||| || || ||||| || Sbjct 1147070 CTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTT 1147011 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | || || || ||| || || | |||||| || || ||||| Sbjct 1147010 AGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTCTTCCCGGT 1146951 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| || || || |||||||| Sbjct 1146950 GAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| || ||||| ||||| ||||||||||| || ||||| || | || || Sbjct 1147819 ACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTACGTCCATCCTC 1147761 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || || || || ||||| ||||| | |||||| || || || || || || || || || Sbjct 1147760 AAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCCTG 1147701 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || || || || | ||||| || ||| || || | ||| |||||||| Sbjct 1147700 AATCTTGGCCTTCACATTATCAATCGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTTTT 1147641 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || || |||||| Sbjct 1147640 CCCAGTCAAGGTCTTAACAAAGATCTGCATT 1147610 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || ||||| || ||||||||||| ||||| | | | || || ||||| Sbjct 1147357 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCA-TCCTCAAGCTG 1147299 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || ||||| | ||||||||| || || || ||||| || || || ||||| Sbjct 1147298 CTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTT 1147239 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || ||||| ||||| || | || || || || || || Sbjct 1147238 CGCCTTGACATTGTCGATAGTATCGGAACTCTCCACCTCCAAGGTGATAGTCTTGCCAGT 1147179 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| ||||| Sbjct 1147178 CAATGTCTTGACAAAAATCTGCAT 1147155 >seq1 Length=34941034 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || ||||| || | || | || || || ||||||||||| ||||||||||| || Sbjct 3649562 CCACCCCTGAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCT 3649503 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | || || || ||||| || ||||| |||| | ||||||||| || || Sbjct 3649502 AACGTCCTTCCA-TCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGG 3649444 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || ||||| || | |||||| || || || Sbjct 3649443 AATCCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGAC 3649384 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || || ||||| | |||||| || || |||||||| Sbjct 3649383 TTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 >seq157 Length=426068 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| ||||| || || || ||||| || |||||||| || ||||| | | | Sbjct 398730 AGGCGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATG-TACG 398672 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | ||| |||||||| || || ||||| || | | ||||| || || || || || || Sbjct 398671 ACCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTC 398612 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || ||| || || ||| | ||| || || || || || | ||| Sbjct 398611 CTTGTCTTGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGT 398552 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || || | ||| || |||||||||||||| Sbjct 398551 AATGGTCTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || || || || || | | || || || ||| Sbjct 398265 ACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCG 398206 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || ||||| |||| | ||| || || || || || ||||| || |||||| Sbjct 398205 AGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGA 398146 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | ||||| || ||| || || || |||||||| || Sbjct 398145 ATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTC 398086 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||| ||||| || || |||||||| Sbjct 398085 CCTGTTAGGGTTTTGACAAAGATTTGCAT 398057 >seq170 Length=38796167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 134502 AACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCG 134561 ||||| | || ||| | |||| || ||||||||||| || | | || || Sbjct 3261153 AACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACGAGAGTTCTTCCATCT 3261212 Query 134562 TCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCT 134621 || | ||||| | || ||||||| || || ||||| || | || ||||| || ||| Sbjct 3261213 TCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAAATTCCTTCCTTGTCT 3261272 Query 134622 TGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTT 134681 || || ||| ||| || ||| | | | ||| | ||||| || || || || |||||| Sbjct 3261273 TGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGACTTCTAGGGTTATGGTT 3261332 Query 134682 TTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | |||| ||||| |||||||| ||||||||| Sbjct 3261333 TTTCTAGTTACGGTTTTCACGAAAATCTGCATTTTG 3261368 >seq180 Length=370853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || || || || || || |||||||| || || Sbjct 23745 CCACCTCTGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 23686 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || ||||| || || ||||||| ||| || || | || || Sbjct 23685 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGA 23626 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||||||||||| ||||| || ||| ||| || Sbjct 23625 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCAC 23594 >seq145 Length=44152522 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || || || || || || |||||||| || || Sbjct 33200774 CCACCTCTGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCA 33200715 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || ||||| || || ||||||| ||| || || | || || Sbjct 33200714 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTGTGGTGGA 33200655 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||||||||||| ||||| || ||| ||| || Sbjct 33200654 ATGCCTTCTTTATCTTGGATCTTTGCTTTCAC 33200623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505144146699920