Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq127 260 2e-64 >seq127 Length=60962716 Score = 260 bits (288), Expect = 2e-64 Identities = 596/891 (67%), Gaps = 12/891 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | ||||| || |||||||| || |||| | || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | | || | || | | || | | | | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| |||||||| || || || |||||| ||||| ||||| |||| | Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 ||| || | || || | ||| || | || || || || || ||| | | |||| Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 ||| ||| ||| |||| | | || | | ||| ||| || || || Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 |||||||| || || || |||| | || ||||| || ||||| || | || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||||| || |||||||| |||| |||| ||| ||| || ||||| || ||||| Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAAAATGG-AGCAGAAACTTCCTGAGAAGAATATCCCTTC 5747063 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTT 39801 | ||||| |||| | |||||| | | || ||| || |||||| | Sbjct 5747064 AATACAAGCAAACGCAATTATCCTCTCTGCAAA---TGATTCAGACCCATCAATCCACCT 5747120 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||||||||||| ||||| || ||||| |||| ||||| || || |||||| | Sbjct 5747121 CAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTG 5747180 Query 39862 ATGTTTTTC--ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | ||||| || | ||| |||| || || |||| | || |||||||| ||| Sbjct 5747181 AGATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAA 5747238 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || ||||||||||| || || ||||| |||||||| | ||||||| | ||| ||| Sbjct 5747239 TGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACC 5747298 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||| ||| | | || | |||||| ||| |||||||| ||||| || || Sbjct 5747299 TCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAG 5747358 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATA 40099 || | || ||| |||| |||| ||| || |||| || | | | ||||| | | | Sbjct 5747359 GCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAA 5747418 Query 40100 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATG 40159 || ||||| ||| ||||||||||| ||||||||||| || || || ||||||||||| Sbjct 5747419 TCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACATT 5747478 Query 40160 TTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 | ||| || | | |||| ||||| || ||| ||| ||| ||| ||| Sbjct 5747479 TCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTTT 5747529 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| || || | ||| | || | |||||| || | ||| || Sbjct 7120182 TCCTCCTTGGTCAACATATCGTGCTGTATCATTGAACACCCGCAGCATTGGGACAATGCC 7120241 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||||||||||| | || || ||||| || ||| Sbjct 7120242 ATTCGATGTCCCATTTGTACCACGTATATAACTTCCAGTGGCACGGATATTGTGAACAGA 7120301 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || |||| ||| | |||||| |||| || |||||||| Sbjct 7120302 GACACCAATACCTCCAGCAGATTTACTGATAACAGCACACTCCTTCAGAGTATCATATAT 7120361 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 || || |||||||||||| |||| Sbjct 7120362 TCCTTCAATGCTATCATCTTTCAT 7120385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686563233355440