Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq127 179 3e-40 >seq127 Length=60962716 Score = 179 bits (198), Expect = 3e-40 Identities = 397/590 (67%), Gaps = 4/590 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||| |||| | | || ||| |||||||||||||||| | || || |||| Sbjct 5747509 TGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAGCCGAAGCATCGTTTT 5747450 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || |||||||| ||| | | || |||| || ||| | ||| | Sbjct 5747449 GGACGGCTGAAGAAGTCGATCTATCATCCGATTTAGGTCACTGGGAAACCCTAACTTCCG 5747390 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || |||||||| || | ||| | || || || || || || || || || Sbjct 5747389 ACGAGAAACATTTCATTACACACGTTCTCGCCTTCTTCGCCGCATCAGATGGAATCGTGC 5747330 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||||| | | |||||||| | |||| || ||| | | ||||| || |||| Sbjct 5747329 TGGAAAATCTCGCAGGTCGGTTTATGAAAGAGGTGCAAGTCGCTGAAGCGCGCGCATTTT 5747270 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || |||||||| ||||| ||||| |||||||| ||||||||| || || |||| | Sbjct 5747269 ACGGTTTTCAAATCGCCATTGAAAACATTCATTCTGAAATGTACTCACTCCTTTTAGAAA 5747210 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-T 44065 | ||||| || ||| | | || || | ||| || || ||||| || || | Sbjct 5747209 CTTACATTAAGGATTCATCCCAAAAATCTCACCTCTTTCGAGCAATCGAAACCGTGCCCT 5747150 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 | | | ||| | || || || ||||| || | ||||| || ||| || |||| | Sbjct 5747149 GTG-TGAAAAAGAAGGCTGATTGGGCACTGAGGTGGATTGATGGGTCTGAATCATTTGCA 5747091 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGC 44184 || | | | |||||||| | | ||||| || ||||| |||||| || ||| | Sbjct 5747090 GAGAGGATAATTGCGTTTGCTTGTATTGAAGGGATATTCTTCTCAGGAAGTTTCTGCT-C 5747032 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||| |||||| | ||||| || || | ||||| || || |||||||| ||||| || || Sbjct 5747031 CATTTTTTGGCTTAAGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTCGAATGAATTGAT 5746972 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 ||| || ||||| | ||||| ||||||||||| || || ||||| Sbjct 5746971 CTCTCGAGACGAAGGACTTCATTGTGATTTTGCTTGTTTATTGTATGGAT 5746922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397261048577230