Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq58 86.0 5e-12 >seq1 Length=34941034 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || ||||| || |||||||| ||| | || | | || || Sbjct 3649544 ACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTC-CATCCTC 3649486 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || || | || || | ||| ||||| || || | ||||| || || Sbjct 3649485 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTG 3649426 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| | || | | || | ||||||| | || ||||| ||||| |||| || Sbjct 3649425 GATCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTT 3649366 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||||||||| Sbjct 3649365 TCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | ||| || | |||| || || || || || || || || ||||| || || Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || | || || |||||||||||||| | ||||| | |||||| || | || Sbjct 3650186 AATGTCCTGC-CATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGG 3650128 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || | ||||| |||| | || | || |||| | |||||| Sbjct 3650127 AATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAAC 3650068 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||||| || ||||| ||||||||||| ||||| Sbjct 3650067 TTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 >seq58 Length=2649046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | || ||||||| || ||||| ||| Sbjct 1146667 GTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCG 1146608 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||| |||||||| || || | || || || || |||||| || Sbjct 1146607 GCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTT 1146548 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | ||||| || |||||||| | ||||| || || ||| Sbjct 1146547 ACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTT 1146488 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 1146487 TTCACGAAGATTTGCAT 1146471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424725970473552