Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq127 132 6e-26 seq187 123 3e-23 seq1 100 4e-16 seq18 93.3 5e-14 >seq127 Length=60962716 Score = 132 bits (146), Expect = 6e-26 Identities = 367/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || || ||||| || || | |||||| || || || ||| ||||| || || Sbjct 5746951 TGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATTAGCCCA 5747010 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||| | |||| |||| | |||||| || |||||||| || || || | ||| Sbjct 5747011 CGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCAATACAA 5747070 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 |||||||||| | | || || || || |||| |||||| ||| ||| |||| Sbjct 5747071 GCAAACGCAATTATCCTCTCTGCAAATGATTCAGACC---CATCAATCCACCTCAGTGCC 5747127 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 || | |||||||| | | ||| || || |||| ||| ||| ||| | || ||| Sbjct 5747128 CAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGATTTT 5747187 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 122970 | ||| |||||||||||| | || | | ||| || |||| ||||| || Sbjct 5747188 TGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAATGAATGTTT 5747247 Query 122971 TCATTATGGC--ATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 ||| ||||| |||| | |||| |||| ||||||||| | || ||||| | | Sbjct 5747248 TCA--ATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCTCTTTCA 5747305 Query 123029 CAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGA 123088 ||| || ||| || | || |||||||| || | || ||||| || || | Sbjct 5747306 TAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGGCGAGAA 5747365 Query 123089 TGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGG 123148 || | ||||| | || || | | | ||||| | ||||| | | ||| | Sbjct 5747366 CGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAATCGGATG 5747425 Query 123149 ACAAATCAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCCTTTTTATAGAGTTCCCAG 123207 | | ||| |||||||| || |||| || | | || | || ||||| || | ||||||| Sbjct 5747426 ATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCG-GCTTTTTTGTACATTTCCCAG 5747484 Query 123208 AGTTGTGGATACTTCA 123223 | |||||| || |||| Sbjct 5747485 ATTTGTGGGTA-TTCA 5747499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || |||||||| |||||||||||||||||||| | || || ||||| |||| || Sbjct 7120536 TGGGGCCTTGGTGTGCCAGCATTGAAGAGGGTTGGAGAAGCATGTGTGAAC-CACCTCTG 7120594 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| || ||| || | | | || || || || ||| ||||| |||| || Sbjct 7120595 AGACATGAAGTGGTAGGTTTTGATAGCCGACTCGATATCATCCTTATGGATCCCGACAGC 7120654 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| | ||||| ||||| | |||| | | || || || | | |||| Sbjct 7120655 AACCCTCATCAGCATGTGTTGTGGTCTCTCCACAACTTTTCC-TCTCACCTTCAAGAGAT 7120713 Query 112119 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | || ||||||||||||||| |||||||||| || | ||| |||| Sbjct 7120714 ATGATC-TCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 7120759 >seq187 Length=45274173 Score = 123 bits (136), Expect = 3e-23 Identities = 229/334 (69%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || ||||| || |||| ||| | || ||||| | | |||||| Sbjct 20417857 TCAAGAATGTCTGCTCGGTTAGTTGCAGCAACAACAATTATACCAGTATTACCCTCAAAG 20417916 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | || || | ||| ||||| || |||||||| || | | Sbjct 20417917 CCATCCATCTCAGTCAGAAGCTGGTTCAGTGTCTGTTCCCTTTCATCATTGCCTCCCCCA 20417976 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | |||| | ||||| |||||||| ||||| | || |||||||| || Sbjct 20417977 ATCCCAGTACCCCTTTGCCTCCCCACTGCATCAATTTCATCCACAAACACAATACAAGGA 20418036 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || || || || || | | || ||||||||||||||| Sbjct 20418037 GCATTTTCCTTTGCTTTCTTGAAAAGGTCACGCACTCGTGAAGCTCCCACACCAACAAAC 20418096 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || ||||| | || | || | || || ||||| ||| | ||| || || | Sbjct 20418097 ATTTCAACAAATTCTGACCCGGA--AATGGAGAAAAATGGAACACCAGCTTCCCCAGCAA 20418154 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || ||||||||||| || ||||| Sbjct 20418155 TAGCCTTAGCCAGCAGGGTCTTTCCAGTCCCTGG 20418188 >seq1 Length=34941034 Score = 100 bits (110), Expect = 4e-16 Identities = 221/327 (68%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || ||||| || |||| ||| | || ||||| | | |||||| Sbjct 27640909 TCAAGAATGTCTGCCCGGTTAGTTGCAGCAACAACAATTATACCAGTATTACCCTCAAAG 27640850 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| ||||| || |||||||| || | | Sbjct 27640849 CCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCCCTTTCATCATTGCCTCCCCCA 27640790 Query 11603 CCACCAG--CACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 |||| | | | |||| | ||||| ||||| |||||| | | || |||||||| | Sbjct 27640789 ATCCCAGTACCCCCCTTTGCCTCCCCACTGCATCGATCTCAACCACAAACACAATACAAG 27640730 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| || | | || || || || || | | || |||||||||||| Sbjct 27640729 GAGCATTTTCCTTTGCTTTCTTGAAAAGGTCACGCACTCGTGAAGC-TCCACACCAACAA 27640671 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778 |||| || ||||| | || | || | || || ||||| ||| | ||| || || Sbjct 27640670 ACATTTCAACAAATTCTGACCCGGA--AATGGAGAAAAATGGAACACCAGCTTCCCCAGC 27640613 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCC 11805 || || || || ||||||||||| Sbjct 27640612 AATAGCCTTAGCCAGCAGGGTCTTTCC 27640586 >seq18 Length=621311 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/202 (71%), Gaps = 14/202 (7%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || || ||||| |||||||||||| | Sbjct 599111 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--- 599167 Query 11599 CATACCA-CCAGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || Sbjct 599168 ---ACCACCCATCCCTGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATAAACAC 599224 Query 11653 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 ||| || || || || | | || | ||||| | ||| | ||||| || |||| Sbjct 599225 AATGCAAGG-TGCCTTGCTCTTTGCCTTCTCAAACAAATCCCTCACCCTAGAAGCTCCCA 599283 Query 11712 CACCAACAAACATCTCCACAAA 11733 | |||||||||| ||||||||| Sbjct 599284 CCCCAACAAACAGCTCCACAAA 599305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627716052801600