Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq37912 91.5 2e-13 seq187 89.7 6e-13 >seq37912 Length=1164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 189/277 (68%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 14151 CAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGC 14208 ||||||| |||||||| || || ||||||| || ||||||||||| || || ||| Sbjct 1164 CAAAGCCGTCCATCTCGACCAGCAGCTGATTGAGCGTCTGTTCGCGTTCGTCGTTGCCGC 1105 Query 14209 AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | | || || | ||| || ||||| ||||| |||||||||||||| | || Sbjct 1104 CGCC--GAGGCCGGCGCCGCGCTGACGGCCGACTGCGTCGATTTCATCGATGAAGATAAT 1047 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || ||| || | ||| || || || || ||||| | | || ||||| || Sbjct 1046 GCACGGTGCATGCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGCGCCGCGCCGACGCC 987 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 || |||||||| || || | || ||| | || | || ||| || || || | ||| | Sbjct 986 GACGAACATCTCGACGAAGTCGGAACCGG-AGATCGAGAAGAACGGCACCTTGGCTTCGC 928 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCC 14424 | |||||||| |||||| |||||||| || || || Sbjct 927 CGGCGATGGCCTTGGCGAGCAGGGTCTTGCCGGTACC 891 >seq187 Length=45274173 Score = 89.7 bits (98), Expect = 6e-13 Identities = 242/365 (66%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | | || || |||||| || || ||||| || || || Sbjct 20417827 TCAAAGCGTCCAGGCCTCAACAGCGCAGAGTCAAGAATGTCTGCTCGGTTAGTTGCAGCA 20417886 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | |||| || || || | |||||||||||||||||||||| || || || | Sbjct 20417887 ACAACAATTATACCAGTATTACCCTCAAAGCCATCCATCTCAGTCAGAAGCTGGTTCAGT 20417946 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || ||||| | ||||||||| | | | || | || | |||| | || || || Sbjct 20417947 GTCTGTTCCCTTTCATCATTGCCTCCCCCAATCCCAGTACCCCTTTGCCTCCCCACTGCA 20418006 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC-AACTTCAAAGATATC 14304 ||||||||||| | || || ||||| || |||||| || ||| ||| | || Sbjct 20418007 TCAATTTCATCCACAAACACAATACAAGGAGCATTTTCCTTTGCTTTCTTGAAA-AGGTC 20418065 Query 14305 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG 14364 ||||||| || || ||||| |||||||| || ||||| | | ||||| || | Sbjct 20418066 ACGCACTCGTGAAGCTCCCACACCAACAAACATTTCAACAAATTCTGACCCGGAA-ATGG 20418124 Query 14365 -GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCC 14423 || || || || || ||| || || || || || || |||||||| || |||| Sbjct 20418125 AGAAAAATGGAACACCAGCTTCCCCAGCAATAGCCTTAGCCAGCAGGGTCTTTCCAGTCC 20418184 Query 14424 CTGGT 14428 ||||| Sbjct 20418185 CTGGT 20418189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618124080711760