Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq187 123 3e-23 seq127 93.3 5e-14 seq1 91.5 2e-13 seq18 84.2 3e-11 >seq187 Length=45274173 Score = 123 bits (136), Expect = 3e-23 Identities = 249/364 (68%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | | ||||| ||||| || || | || || || || || Sbjct 20417827 TCAAAGCGTCCAGGCCTCAACAGCGCAGAGTCAAGAATGTCTGCTCGGTTAGTTGCAGCA 20417886 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| ||||| || | | ||||| ||||||||||| |||| ||| ||||| | Sbjct 20417887 ACAACAATTATACCAGTATTACCCTCAAAGCCATCCATCTCAGTCAGAAGCTGGTTCAGT 20417946 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9706 || ||||||| ||||||||| || | | |||| || | |||| | ||||| ||| Sbjct 20417947 GTCTGTTCCCTTTCATCATTGCCTCCCCCAATCCCAGTACCCCTTTGCCTCCCCACTGCA 20418006 Query 9707 TCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATC 9765 ||||| ||||| | || || || || || |||||| || ||| ||| || || Sbjct 20418007 TCAATTTCATCCACAAACACAATACAAGGAGCATTTTCCTTTGCTTTCTTGAAA-AGGTC 20418065 Query 9766 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9825 || || || || ||||||||||||||||| || ||||| | || ||||| || | Sbjct 20418066 ACGCACTCGTGAAGCTCCCACACCAACAAACATTTCAACAAATTCTGACCCGGAA-ATGG 20418124 Query 9826 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9884 || || || ||| || ||| || ||||| || || || || ||||| || || | Sbjct 20418125 AGAAAAATGGAACACCAGCTTCCCCAGCAATAGCCTTAGCCAGCAGGGTCTTTCCAGTCC 20418184 Query 9885 CTGG 9888 |||| Sbjct 20418185 CTGG 20418188 >seq127 Length=60962716 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAAC 104195 ||||||| |||| || ||| |||||| ||||||||||||||| || | ||||| | | Sbjct 7120762 AGAGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTGAA 7120704 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | ||| |||| | ||||| ||||| | ||| | || || |||| | Sbjct 7120703 GGTGAGAGGAAAAGTTG-TGGAGAGACCACAACACATGCTGATGAGGGTTGCTGTCGGGA 7120645 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 104314 | ||| ||| || || || || | | | || ||| || ||||| || |||| | Sbjct 7120644 TCCATAAGGATGATATCGAGTCGGCTATCAAAACCTACCACTTCATGTCTCAGAGGTG-G 7120586 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 |||| || || | |||||||||||||||||||| |||||||| |||||| Sbjct 7120585 TTCACACATGCTTCTCCAACCCTCTTCAATGCTGGCACACCAAGGCCCCAA 7120535 >seq1 Length=34941034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/328 (68%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | || || || || || | |||| ||||| || | | ||||| Sbjct 27640909 TCAAGAATGTCTGCCCGGTTAGTTGCAGCAACAACAATTATACCAGTATTACCCTCAAAG 27640850 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| |||| ||| || || | || ||||||| ||||||||| || | | Sbjct 27640849 CCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCCCTTTCATCATTGCCTCCCCCA 27640790 Query 9677 CCACCAG--CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 |||| | | | |||| | ||||| ||||| |||||| | | || || || || | Sbjct 27640789 ATCCCAGTACCCCCCTTTGCCTCCCCACTGCATCGATCTCAACCACAAACACAATACAAG 27640730 Query 9735 GTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGC-CCACACCAAC 9792 | |||||| || ||| ||| || || || ||| | || || |||||||||| Sbjct 27640729 GAGCATTTTCCTTTGCTTTCTTGAAA-AGGTCACG--CACTCGTGAAGCTCCACACCAAC 27640673 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 |||||| || ||||| | || ||||| || | || || || ||| || ||| || | Sbjct 27640672 AAACATTTCAACAAATTCTGACCCGGAA-ATGGAGAAAAATGGAACACCAGCTTCCCCAG 27640614 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || || ||||| || Sbjct 27640613 CAATAGCCTTAGCCAGCAGGGTCTTTCC 27640586 >seq18 Length=621311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/207 (70%), Gaps = 24/207 (12%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 599111 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--- 599167 Query 9673 CATACCA-CCAGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || Sbjct 599168 ---ACCACCCATCCCTGCTCCTCTTTGTCTCCCAACAGCATCAATCTCATCAATAAACAC 599224 Query 9727 GATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GC 9780 ||||| || ||| | || || | ||||| | ||||| ||| || | || Sbjct 599225 AATGCAAGGTGCCTTGCTCTTTGCCTTC----TCAAACAAATCCC--TCACCCTAGAAGC 599278 Query 9781 GCCCACACCAACAAACATCTCCACAAA 9807 ||||| |||||||||| ||||||||| Sbjct 599279 TCCCACCCCAACAAACAGCTCCACAAA 599305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582967376073040