Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12959 96.9 4e-15 seq170 84.2 2e-11 seq43 84.2 2e-11 seq187 82.4 8e-11 >seq12959 Length=741 Score = 96.9 bits (106), Expect = 4e-15 Identities = 203/300 (68%), Gaps = 12/300 (4%) Strand=Plus/Minus Query 124740 GCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGAC 124799 ||| |||| ||||| | ||||||||||| ||| ||||| || || ||||||||| | Sbjct 739 GCATACATGCCGTAGGCTTCGCGGTAGTTGACCGTGATCCAGTAGGCATAGAGCTTGGCC 680 Query 124800 ACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATC 124859 || | || ||||| || |||||||| || ||| |||| || || | | || ||||| | Sbjct 679 ACTGCGTACGGGCTGCGCGGGTAGAACGGCGTGGTTTCCTTCTGCGGAATTTCCTGAACC 620 Query 124860 TTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA------TTTGAATTTTGAAATAGAA 124913 || ||| || ||||| ||||| ||||| ||| |||| | || Sbjct 619 AGACCGTACAGTTCGGAAGTCGAAGCCTGGTAGAAGCGCGCTTT--CTTTTCGAGGCCAA 562 Query 124914 TTCGTTTGACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATTGGCGGTA 124973 | || || || ||||| | ||| || || | || ||| |||| |||||||||| Sbjct 561 ---GAATG-CGGATGGCCTCGAGGATGCGCAGTGCGCCGATGCCGTCGGCATTGGCGGTG 506 Query 124974 TACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTACACCTCG 125033 || || |||| || || || | ||||| |||||||| | |||||||| | |||| Sbjct 505 TATTCCGGCTCCTCGAAGGAGACGGCGACATGAGACTGGGCGGCGAGGTTGTAGATCTCG 446 >seq170 Length=38796167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36958554 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36958495 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 36958494 TGAGCTACGAGAGCAA 36958479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 79621 AGAC-TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| ||||||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 5677692 AGACGTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 5677633 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| ||||||| |||||| Sbjct 5677632 CCAACTGAGCTATGAAAGC 5677614 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36937808 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36937749 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36937748 TGAGCTACGAGAGCA 36937734 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36957851 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36957792 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36957791 TGAGCTACGAGAGCA 36957777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36971000 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36970941 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36970940 TGAGCTACGAGAGCA 36970926 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36977683 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36977624 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36977623 TGAGCTACGAGAGCA 36977609 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36990903 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36990844 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36990843 TGAGCTACGAGAGCA 36990829 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36992690 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36992631 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36992630 TGAGCTACGAGAGCA 36992616 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36992868 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36992809 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 36992808 TGAGCTACGAGAGCA 36992794 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 37052299 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 37052240 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 37052239 TGAGCTACGAGAGCA 37052225 >seq43 Length=26577699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 181239 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 181298 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 181299 TGAGCTATGAAAGCAA 181314 >seq187 Length=45274173 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 41720217 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 41720276 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 41720277 AACTGAGCTACGAGAGC 41720293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546940709310800