Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq57 134 1e-26 seq146 125 6e-24 seq58 123 2e-23 seq1 120 3e-22 seq157 105 6e-18 seq180 89.7 4e-13 seq96 87.8 2e-12 seq170 86.0 5e-12 >seq57 Length=33024243 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || || ||||| ||| | ||| Sbjct 18658458 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCCTCC 18658399 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||| || ||||||||||||||||| ||||| || ||| Sbjct 18658398 GACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAA 18658339 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||| | ||||| || || || | ||||||||| Sbjct 18658338 CAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTACAAC 18658279 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || |||||||| | || | ||| | ||| || | ||||| Sbjct 18658278 ATCCAGAAAGAGTCGACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 18658232 >seq146 Length=1334862 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || || ||||||||| | ||| Sbjct 1119869 ATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTCC 1119928 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||| || |||||||||||||| || ||||| |||||| Sbjct 1119929 GATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 1119988 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| |||||||||||||| | || | | ||||||||| Sbjct 1119989 CAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAAC 1120048 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| || || || || | || ||||| Sbjct 1120049 ATTCAGAAAGAATCAACGCTTCACTTGGT 1120077 >seq58 Length=2649046 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || ||||||||| | || ||||| || || || ||| Sbjct 1146471 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATAACTCTCGAGGTTGAGAGTTCC 1146530 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || |||||||| ||||| || || || |||||| Sbjct 1146531 GACACCATCGACAACGTAAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 1146590 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||| | |||||| | || | |||| |||||| Sbjct 1146591 CAACGTTTAATCTTTGCCGGAAAACAACTTGAAGACGGCCGAACTCTCGCCGACTACAAC 1146650 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || ||||||||||| || | ||| | || | ||||| Sbjct 1146651 ATCCAAAAGGAGTCAACTCTCCATCTTGTCCTCCGTTT 1146688 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || |||||||| ||| ||| Sbjct 1146699 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAAAGTTCC 1146758 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| |||||||||||||| |||||||| ||||| || || Sbjct 1146759 GATACTATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 1146818 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || || | |||||| | ||| | |||||||||| Sbjct 1146819 CAAAGGCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGGCGAACCCTCGCCGATTACAAT 1146878 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| | ||||||| || Sbjct 1146879 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTAGGGGTGGTAT 1146928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || ||| | || || || || Sbjct 1147383 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCG 1147442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| ||| || || || || || || || || || || || Sbjct 1147443 GACACGATCGACAATGTCAAGGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAG 1147502 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || || | ||| || | |||||||| Sbjct 1147503 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCGGATTACAAT 1147562 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | |||||| |||| || || Sbjct 1147563 ATCCAAAAGGAGTCTACCCTTCACTTGGTGCTTCGTTTGAGGGGAGGAAT 1147612 >seq1 Length=34941034 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || || ||||| || ||| || Sbjct 3649563 CATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTC 3649622 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || ||||||| || || || || || ||||| || || Sbjct 3649623 AGACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCA 3649682 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | ||||| || ||||||||||| || ||| | | |||||||| Sbjct 3649683 GCAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAA 3649742 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| ||| | || |||||| | || || ||||||| || Sbjct 3649743 CATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGGTAT 3649793 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || |||||| | || || || ||||| ||| || Sbjct 3650019 CATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTC 3650078 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || ||| |||||| |||||||| ||| | || || Sbjct 3650079 AGATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCA 3650138 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||||| ||||| | || || | ||| | | |||||||| Sbjct 3650139 ACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAA 3650198 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || || || ||||| | |||||| |||| || || Sbjct 3650199 CATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGGGAT 3650249 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| |||| || ||||| ||||| || Sbjct 3650476 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTGGAGAGTTCT 3650535 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||| ||||| ||||| || || || ||||| Sbjct 3650536 GATACAATTGATAATGTGAAGACCAAGATTCAGGACAAGGAAGGTATCCCTCCAGATCAG 3650595 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||| || | || | | |||||||| Sbjct 3650596 CAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGATGGGCGAACTCTGGCAGATTACAAT 3650655 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | || | || | ||| | || ||||| Sbjct 3650656 ATTCAGAAGGAGTCGACCCTTCACCTTGTCCTTCGTCTTCGCGGTGG 3650702 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || |||||||| ||| || Sbjct 3650248 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACACTTGAAGTTGAAAGCTCG 3650307 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||| || |||||| || || || ||| | || || Sbjct 3650308 GATACTATTGACAATGTGAAGGCAAAGATCACAGACAAGGAGGGAATTCCAGCTGACCAG 3650367 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||| || | ||| | | || || ||| Sbjct 3650368 CAGAGACTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGGACTCTAGCTGACTATAAC 3650427 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||||| || ||||| | ||| | | ||||| || Sbjct 3650428 ATTCAAAAGGAATCAACCTTGCACTTGGTCCTCCGTCTCAGAGGTGGGAT 3650477 >seq157 Length=426068 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| || || || ||| | ||||| ||||| || ||| || Sbjct 398056 CATGCAAATCTTTGTCAAAACCCTAACAGGGAAGACCATTACCCTTGAGGTTGAAAGCTC 398115 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||||||||||| ||||| || ||||| || || Sbjct 398116 TGACACCATTGACAATGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCAGACCA 398175 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | || || |||||| | || || || || | | ||||| || Sbjct 398176 ACAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTCTAGCTGATTATAA 398235 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | || | || ||||| || Sbjct 398236 TATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGGGAT 398286 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || ||||| || ||||| || Sbjct 397829 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACGATCACTCTCGAGGTGGAGAGTTCT 397888 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||| ||||||||||| || ||||| || || || || Sbjct 397889 GATACAATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 397948 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || ||| | ||||| | ||| || | |||||||| Sbjct 397949 CAACGTCTGATCTTTGCCGGTAAGCAACTCGAAGATGGCCGAACCCTTGCTGATTACAAT 398008 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | ||| | || | || | || |||||||| Sbjct 398009 ATTCAGAAGGAGTCAACCCTTCATCTTGTCCTCCGCCTCCGTGGTGGCAT 398058 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| | |||||| | || || || || Sbjct 398285 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCT 398344 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || || || || |||||||| ||||| || ||||| |||||| Sbjct 398345 GATACGATTGACAATGTGAAGGCTAAGATACAAGACAAGGAAGGTATCCCACCAGATCAA 398404 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || ||| | || || || || | | |||||||| Sbjct 398405 CAGAGGCTCATCTTTGCCGGTAAGCAACTTGAGGATGGTCGTACTTTGGCAGATTACAAT 398464 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||||| || | ||| | || ||||| || Sbjct 398465 ATCCAAAAGGAGTCTACCCTTCATTTAGTCCTTCGTCTTCGTGGTGGTAT 398514 >seq180 Length=370853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || ||| ||| || ||||||||||||||||| ||||| | ||||| ||| | || | | Sbjct 23594 GTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCACACCAACAACGTCTGATTTTC 23653 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| |||||| | ||||| || || || | ||||||||||| || || |||||| Sbjct 23654 GCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTACAACATCCAGAAAGAGTCG 23713 Query 27183 AC 27184 || Sbjct 23714 AC 23715 >seq96 Length=52461754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || ||| ||| || ||||||||||||||||| ||||| | ||||| ||| | || | | Sbjct 45648367 GTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCACACCAACAACGTCTGATTTTC 45648308 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| |||||||| ||||| || || || | ||||||||||| || || |||||| Sbjct 45648307 GCCGGAAAACAATT-GAAGATGGTCGCACACTTGCTGATTACAACATCCAGAAAGAGTCG 45648249 >seq170 Length=38796167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || | || | || || || ||||| ||| | | | Sbjct 3261364 ATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGAATCTTTC 3261305 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || | || ||| ||| || |||||||| ||||| || |||| |||||| Sbjct 3261304 GATATAATCGACAACGTGAAAACAAAGATCCAAGACAAGGAAGGAATTTCACCAGATCAA 3261245 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||| | |||||||||||||| | || | ||||||||| Sbjct 3261244 CAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAGATTACAAC 3261185 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||||| || || | || | |||||||| || Sbjct 3261184 ATTCAGAAAGAATTGAAGCTTCATTTGGTGTT 3261153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434699603425920