Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq10036 87.8 2e-12 seq22240 86.0 6e-12 seq33722 84.2 2e-11 >seq10036 Length=796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 52356 CGGTGTATAGCGCAGTCTGGTAGCGCGAATGCTTTGGGAGCATTAGGTCGTTGGTTCGAG 52415 ||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||| Sbjct 357 CGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCGAA 298 Query 52416 TCCAACTACACCGACCAA 52433 ||| |||| |||||||| Sbjct 297 TCCCTCTACCCCGACCAA 280 >seq22240 Length=611 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 50653 TGCTGGATTAGCTCAGTAGGTAGAGCGCCTCACTTGTAATGAGGATGTCGCGGGTTCGAT 50712 ||| || |||||||||| ||||||||||| |||||| |||||||||||||||||| Sbjct 172 TGCCGGTTTAGCTCAGTTGGTAGAGCGCCAGTTTTGTAAACTGGATGTCGCGGGTTCGAT 231 Query 50713 TCCTGCATCCAGCACCA 50729 ||||||| || |||||| Sbjct 232 TCCTGCAACCGGCACCA 248 >seq33722 Length=501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 50654 GCTGGATTAGCTCAGTAGGTAGAGCGCCTCACTTGTAATGAGGATGTCGCGGGTTCGATT 50713 || || |||||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct 81 GCCGGTTTAGCTCAGTTGGTAGAGCGCCAGTTTTGTAAACTGGATGTCGCGGGTTCGATT 140 Query 50714 CCTGCATCCAGCACCA 50729 |||||| || |||||| Sbjct 141 CCTGCAACCGGCACCA 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478773419830720