Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq26599 104 1e-17 >seq26599 Length=563 Score = 104 bits (114), Expect = 1e-17 Identities = 284/433 (66%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 64112 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 64171 ||| | ||||| | || ||||| || || || ||| || || ||| | || || Sbjct 109 CCGCGCGGCCGCATCGTTGAAATTTATGGTCCTGAAAGCTCCGGCAAGACGACGCTTGCC 168 Query 64172 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 64231 || || || | ||| | || |||||| || |||| || | | |||| || || Sbjct 169 CTGCAGACGATCGCCGAAGCCCAGAAGAAGGGCGGCATTTGCGGTTTCGTCGATGCCGAA 228 Query 64232 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 64291 ||| | || || || | || ||| |||||| || || || || || ||| || | Sbjct 229 CACGCGCTTGATCCGGTCTATGCCCGCAAGCTCGGCGTCGATCTTGAAAATCTCTTGATC 288 Query 64292 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 64351 |||||||| |||||||||||||| || || ||| ||| || || || || Sbjct 289 TCGCAGCCGGATACTGGCGAGCAGGCGCTTGAAATCACCGACACACTTGTGCGTTCGGGT 348 Query 64352 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 64411 | ||| | |||| | || || || || || || |||||||| || || ||||| Sbjct 349 GCGCTCGATGTTCTCGTGATCGATTCGGTTGCAGCACTCGTGCCGCGTGCTGAAATCGAA 408 Query 64412 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 64471 ||||| || || ||||| | ||||| || ||||| || ||| ||||| ||||| Sbjct 409 GGCGAGATGGGCGACAGCCTTCCGGGCCTCCAGGCGCGTCTGATGAGCCAGGCGCTGCGC 468 Query 64472 AAGCTCACCGGCACCATCTCCAGCACCAA-CACGCTGACGCTCTGGGTCAACCAGTTGCG 64530 ||||| |||| | ||||||| | || || | | | ||| |||||||| | || Sbjct 469 AAGCTTACCGCTTCGATCTCCAAGTCGAAGCATGGTCA---TCTTCATCAACCAGATCCG 525 Query 64531 CGAGAAGATCGGC 64543 | |||||||||| Sbjct 526 CATGAAGATCGGC 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232689010466906