Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq23080 96.9 2e-15 seq31027 82.4 4e-11 >seq23080 Length=601 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/60 (97%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 62880 GTAGCTCAGCTTGG-TAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 62938 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 202 GTAGCTCAGCTTGGCTAGAGTGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 143 >seq31027 Length=523 Score = 82.4 bits (90), Expect = 4e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 66123 ATGGGTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTAC 66182 || ||||||||||| ||| ||||||| |||||| |||||| || ||| |||||||| Sbjct 282 ATTGGTGCCCCCACCAGGACTCGAACCCGGGACCCCCTGATTACAAATCAGGTGCTCTAC 341 Query 66183 CAACTGAGCTATAGGGGC 66200 ||||||||||||| |||| Sbjct 342 CAACTGAGCTATAAGGGC 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243822746710192