Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq9315 87.8 2e-12 seq6003 84.2 2e-11 seq5135 84.2 2e-11 >seq9315 Length=809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 90723 CGGGGTGTAGTTCAG--TGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90780 |||||||||| |||| ||| ||||||||| ||| ||||| |||| ||||||||||| | Sbjct 667 CGGGGTGTAGCTCAGCTTGGTAGAGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAAG 608 Query 90781 TCCTGTCACCCCGAC 90795 ||||||||||||||| Sbjct 607 TCCTGTCACCCCGAC 593 >seq6003 Length=879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 90723 CGGGGTGTAGTTCAGT--GGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90780 |||||||||| ||||| || |||||||| ||| ||||| ||| |||||||||||||| Sbjct 521 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 462 Query 90781 TCCTGTCACCCCGAC 90795 ||||||| ||||||| Sbjct 461 TCCTGTCTCCCCGAC 447 >seq5135 Length=905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 90723 CGGGGTGTAGTTCAGT--GGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90780 |||||||||| ||||| || |||||||| ||| ||||| ||| |||||||||||||| Sbjct 697 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 638 Query 90781 TCCTGTCACCCCGAC 90795 ||||||| ||||||| Sbjct 637 TCCTGTCTCCCCGAC 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493812250363040