Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq33184 325 1e-84 seq34964 86.0 2e-12 seq159 86.0 2e-12 seq39619 82.4 2e-11 seq20944 82.4 2e-11 seq56 80.6 9e-11 >seq33184 Length=504 Score = 325 bits (360), Expect = 1e-84 Identities = 252/300 (84%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2425 GGCGTCATGCGACCTGTCATGCTCGATGGCGCTGTCTTCGCTCATCGTTCGCCAGTCAGG 2484 |||||||||||| | |||||||||||| || |||||||||||||| || |||||||| || Sbjct 21 GGCGTCATGCGAACGGTCATGCTCGATCGCACTGTCTTCGCTCATGGTGCGCCAGTCCGG 80 Query 2485 CCAAACGCGGGCCATGTTCTTCTGTTGCTTCGCGAGAAGGGCCGGGAATAAGTCGGGAGC 2544 |||| |||||||||||| ||||| || ||||||||||| ||||| | | |||| || Sbjct 81 CCAAGTGCGGGCCATGTTTTTCTGCTGTTTCGCGAGAAGTGCCGGCAGGAGATCGGAGGC 140 Query 2545 CTTGCCGCCGTGGCGCCAGAAGCCGTCCATAGCCAGGATCACGACATCGACCCACTCCGA 2604 ||||||||| || |||||||| || ||||| || || || |||||||||||||| || || Sbjct 141 CTTGCCGCCATGCCGCCAGAAACCATCCATGGCGAGAATGACGACATCGACCCATTCGGA 200 Query 2605 CAGGTCGTGCGGCTCCTGTTCGATCTCGCGCAATTCCTTGCGGATATGATCGATGATGCC 2664 |||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| | || Sbjct 201 CAGGTCGTGCGGGTCCTGCTCGATCTCGCGCAACTCTTTGCGGATATGTTCGATAACACC 260 Query 2665 GCCGGTACGAAGCGCGGGGCCGAACGTCTCGCGTGACCAGCCAATCTGGCGCTCGTAGTA 2724 ||| || | ||| |||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 261 CTTGGTGCGCAACGCCGGGCCGAAAGTCTCGCGTGACCAGCCAATCTGGCGTTCGAAGTA 320 >seq34964 Length=1610 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 562 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 503 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 502 CTGTCTCCGCAA 491 >seq159 Length=432747 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 322667 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 322726 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 322727 CTGTCTCCGCAA 322738 >seq39619 Length=1043 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||| ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 411 CGGGGTGGAGCAGCCAGGTAGCTCGCGAGGCTCATAACCTCGAGGTCGTCGGTTCGAATC 352 Query 21210 CTGTCTCCGCAAC 21222 | | | |||| || Sbjct 351 CGGCCCCCGCCAC 339 >seq20944 Length=626 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 427 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 486 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 487 CTGCCCCCGCAACCA 501 >seq56 Length=649304 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| ||| Sbjct 539347 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATA 539406 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 539407 CTGTCTCCGCAA 539418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162447125944428