Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 7e-16 seq57 87.8 1e-12 >seq1 Length=34941034 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || |||||||| || || || |||| ||||||||| | Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| | | | ||||||| || | || || || ||| | || || | Sbjct 3649624 GACACTATTGACAAT-GTTAAGACAAAAATTA-CTGATAAGGAGGGTATCCCACCAGACC 3649681 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||||||||| |||||||| || | || | | | ||||||| Sbjct 3649682 AGCAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACA 3649741 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||||||||| ||| ||| | || |||||| | || || Sbjct 3649742 ACATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTT 3649781 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||||||||| || || ||| | || || |||||| | Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || || | ||||| ||||| |||| || | Sbjct 3650080 GATACCATTGACAAT--GTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACC 3650137 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | | || |||||||| ||||| | || || | | | ||| | ||||||| Sbjct 3650138 AACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACA 3650197 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||||||||| ||||| | |||||| | || || Sbjct 3650198 ACATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGG 3650246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| || || || |||||| | || ||||| ||| | Sbjct 3649336 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAGACTATTACTCTCGAAGTCGAGAGCTCA 3649395 Query 27850 GACGATGTACAATCGGTCAAA-CAAAA--AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| | | ||| | || | || ||||| || || |||| | Sbjct 3649396 GAC-----ACAATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGGATTCCACCAG 3649450 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| || |||||| |||| || | | | | || | || | Sbjct 3649451 ATCAGCAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGAAGGACGTTAGCAGACT 3649510 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 ||||||||||||| || ||| | ||||||||| | ||| Sbjct 3649511 ACAACATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGT 3649551 >seq57 Length=33024243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || ||| || || | || |||||| | Sbjct 18658461 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 18658402 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| || ||| ||| || ||||||||||| |||| | Sbjct 18658401 TCCGACACCATCGACAAT--GTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAG 18658344 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | || ||||| | ||||| |||||||||||| | || || | |||| |||| | ||| Sbjct 18658343 ACCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTG-CTGAT 18658285 Query 27964 TACAACATCCAAAAAGAG 27981 ||||||||||| |||||| Sbjct 18658284 TACAACATCCAGAAAGAG 18658267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355687850160042