Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 seq157 84.2 2e-11 >seq1 Length=34941034 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || || || | ||||| || | ||| ||| || || ||||||||||| Sbjct 3650022 CATGCCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATC 3649963 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 ||| | ||| | | || ||||||||||| || ||||| || || | ||||||||| || Sbjct 3649962 GGCCAATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGG 3649903 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGAC 39231 |||| | | || |||||| ||| | | || |||| || | | || || | Sbjct 3649902 TGGG-ATTCCTTCCTTGTCC-TGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTC 3649845 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || | | || || || || |||||||||||||| ||||| Sbjct 3649844 TCAACTTCCAAGGTTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792 >seq157 Length=426068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| ||||| ||||| ||||| | || || || || || || ||||| Sbjct 398020 CTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAA 397961 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| |||||||| | || | || ||| ||||| ||| | | || | | | | Sbjct 397960 GATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT-TGAATCTTTGCCTTAACAT 397902 Query 39213 CGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || ||||| |||||| || | ||||| | || || |||| || |||| Sbjct 397901 TGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAA 397842 Query 39272 CAAAGATTTGCATCT 39286 ||||||||||||||| Sbjct 397841 CAAAGATTTGCATCT 397827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334908688598