Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq57 134 9e-27 seq146 132 3e-26 seq58 131 1e-25 seq1 125 5e-24 seq157 113 3e-20 seq170 100 2e-16 seq257 93.3 3e-14 seq145 93.3 3e-14 >seq57 Length=33024243 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 18658461 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 18658402 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| |||| | | ||||||||||| | || ||||| Sbjct 18658401 TCCGACACCATCGACAATGTGAAAGCAAAGA-TCCAAGACAAAGAAGGCATTCCACCAGA 18658343 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || || ||||| |||||||| ||||| | ||||| | | ||||| Sbjct 18658342 CCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATTA 18658283 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 18658282 CAACATCCAGAAAGAGTCGAC 18658262 >seq146 Length=1334862 Score = 132 bits (146), Expect = 3e-26 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||| || | ||||||||||||||| |||||||| || |||||||| || || || |||| Sbjct 1119859 AATT-CTCAGAATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAG 1119917 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || || | || || | || || | ||||| ||| || ||||||||||| | Sbjct 1119918 TGGAATCTTCCGATACAATCGACAACGTGAAAAC-AAAGATCCAAGACAAAGAAGGAATT 1119976 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||||||||| || | || || ||||| |||||| ||||||| | | | ||| | Sbjct 1119977 CCACCAGATCAACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTC 1120036 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| || ||||| || || | || || || ||||| | || || || Sbjct 1120037 GCAGATTACAACATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGG 1120095 >seq58 Length=2649046 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || || || || |||||||| ||||| | Sbjct 1146471 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATAACTCTCGAGGTTGAGAGTTCC 1146530 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| || ||||| ||||| | || ||||||||| Sbjct 1146531 GACACCATCGACAACGTAAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 1146590 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| |||||||| |||||||| ||||||| || ||| | | ||| |||||| Sbjct 1146591 CAACGTTTAATCTTTGCCGGAAAACAACTTGAAGACGGCCGAACTCTCGCCGACTACAAC 1146650 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1146651 ATCCAAAAGGAGTCAAC 1146667 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| ||| | || || ||||| |||||| | || ||||| | | Sbjct 1147610 AATGCAGATCTTTGTTAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTTGAAAGCTC 1147669 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || | || || || || ||| | || || || | Sbjct 1147670 GGACACGATTGATAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGTATTCCACCTGACC 1147728 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || ||||| || || | ||| ||||| | ||||||| Sbjct 1147729 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTTTGGCTGATTACA 1147788 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 1147789 ACATTCAGAAGGAGTCCAC 1147807 >seq1 Length=34941034 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || || || | | Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| |||| ||||||| || |||| || || ||| | || ||||| || Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAA-TTACTGATAAGGAGGGTATCCCACCAGACCA 3649682 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||| || ||| ||||||| | || ||| ||| |||||||| Sbjct 3649683 GCAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAA 3649742 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| |||||||| | || || ||| Sbjct 3649743 CATCCAAAAGGAGTCCACCCTCCACTTGGTT 3649773 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct 3649336 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAGACTATTACTCTCGAAGTCGAGAGCTCA 3649395 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | | ||||| || || | || |||||||| Sbjct 3649396 GACACAATCGATAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGGATTCCACCAGATCA 3649454 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||||||||| || | | | || |||| || ||||| Sbjct 3649455 GCAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGAAGGACGTTAGCAGACTACAA 3649514 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || | ||||| ||| Sbjct 3649515 CATCCAAAAGGAATCAACTCTTCATTTGGTT 3649545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||||||||| || || || | || | |||||||| | Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || | || || || ||| ||||| ||||| | || ||||| || Sbjct 3649852 GACACTATTGAGAACGTCAAGAC-TAAGATTCAGGACAAGGAAGGAATCCCACCAGACCA 3649910 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| ||||| || || || | | || || | |||||| || Sbjct 3649911 GCAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAA 3649970 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 || || || |||||||| || || Sbjct 3649971 TATCCAGAAGGAGTCCACTTTGCA 3649994 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| || |||||||| | | Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || | ||||| ||||| | || | || || Sbjct 3650080 GATACCATTGACAATGTGAAGGCGAAGA-TTACAGACAAGGAAGGCATTCCAGCTGACCA 3650138 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| ||||| || || || | | || || | |||||||| Sbjct 3650139 ACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAA 3650198 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || |||||||| || || | ||| | | ||| | ||||| Sbjct 3650199 CATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGG 3650246 >seq157 Length=426068 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| ||||||||||| || || || | || Sbjct 398741 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACGATCACTCTGGAGGTGGAGAGCTCG 398800 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||||| ||| || ||||| ||||| | || |||||||| Sbjct 398801 GATACTATTGATAATGTGAAAAC-AAAGATACAGGACAAGGAAGGGATCCCTCCAGATCA 398859 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || ||||||| | || || | | ||||| || Sbjct 398860 GCAGAGGCTGATTTTTGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTCGCTGATTATAA 398919 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||| | ||| Sbjct 398920 CATTCAGAAGGAATCAACCCTTCATCTTGTT 398950 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| ||||| || || ||| | || ||||| | | Sbjct 398285 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCT 398344 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| |||||| | || |||||||| Sbjct 398345 GATACGATTGACAATGTGAAGGCTAAGA-TACAAGACAAGGAAGGTATCCCACCAGATCA 398403 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| || ||||| || || | || ||||| | |||||||| Sbjct 398404 ACAGAGGCTCATCTTTGCCGGTAAGCAACTTGAGGATGGTCGTACTTTGGCAGATTACAA 398463 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| || | |||||||| Sbjct 398464 TATCCAAAAGGAGTCTACCCTTCATTTAGT 398493 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||| | || || || |||||||||||||| || || | Sbjct 397829 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACGATCACTCTCGAGGTGGAGAGTTCT 397888 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| ||||| || || | || || || || Sbjct 397889 GATACAATTGACAATGTTAAGGC-AAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCA 397947 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || ||||| ||||| | || || | | |||||||| Sbjct 397948 GCAACGTCTGATCTTTGCCGGTAAGCAACTCGAAGATGGCCGAACCCTTGCTGATTACAA 398007 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 398008 TATTCAGAAGGAGTCAAC 398025 >seq170 Length=38796167 Score = 100 bits (110), Expect = 2e-16 Identities = 168/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||||| | ||||||||||||||||| |||||| | || ||||||| || || || |||| Sbjct 3261374 AATTA-TCAAAATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAG 3261316 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || || || | | || || | |||||||| | | ||||| ||||| | Sbjct 3261315 TCGAATCTTTCGATATAATCGACAACGTGAAAACAAAGA-TCCAAGACAAGGAAGGAATT 3261257 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 | ||||||||||| || | || || ||| | |||||| ||||||| | | | ||| | Sbjct 3261256 TCACCAGATCAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTC 3261197 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||||||||| || ||||| | | | ||||| || || ||| | || || || Sbjct 3261196 GTAGATTACAACATTCAGAAAGAATTGAAGCTTCATTTGGTGTTCAGGCTTCGTGGTGG 3261138 >seq257 Length=328955 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 23639 GAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAA 23697 |||| ||||||||||| || ||||| | |||| ||| |||| ||| ||||||| ||| Sbjct 268627 GAAAGACGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAAC-AAAG 268685 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || ||||| ||||| | || |||||||| ||| | | || |||||||| || || Sbjct 268686 ATACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAGCAG 268745 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | || || | | |||||| ||||| || || || || || | ||| | Sbjct 268746 TTGGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTCATCTT 268805 Query 23818 GTT 23820 ||| Sbjct 268806 GTT 268808 >seq145 Length=44152522 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 23639 GAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAA 23697 |||| ||||||||||| || ||||| | |||| ||| |||| ||| ||||||| ||| Sbjct 18651341 GAAAGACGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAAC-AAAG 18651283 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || ||||| ||||| | || |||||||| ||| | | || |||||||| || || Sbjct 18651282 ATACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAGCAG 18651223 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | || || | | |||||| ||||| || || || || || | ||| | Sbjct 18651222 TTGGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTCATCTT 18651163 Query 23818 GTT 23820 ||| Sbjct 18651162 GTT 18651160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337843806924968