Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq127 201 1e-46 >seq127 Length=60962716 Score = 201 bits (222), Expect = 1e-46 Identities = 541/824 (66%), Gaps = 9/824 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| | ||||| ||||| |||||||| Sbjct 5746660 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAACTCCATCCAATCAAAC 5746719 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | || |||| || |||| || || | | ||||| ||||| ||| Sbjct 5746720 GGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAACAATCTATCAGCAACA 5746779 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || |||||||| ||||| | || ||||| || || | || ||||| | || Sbjct 5746780 AACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAAGCAACAGGCAATGCA 5746839 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || ||| || || || || || ||| | | ||| | | | ||| || Sbjct 5746840 TCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATCCCCTGCACTTTCTCC 5746899 Query 4512 TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCT 4571 | | || || || || ||||| |||||||||| |||||||||||||| | ||| Sbjct 5746900 TCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAATCACAATGAAGTCCT 5746959 Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||| |||| ||| || ||||||||||| || ||||||| || | ||| ||| Sbjct 5746960 TCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATTAGCCCACGCTTCTTA 5747019 Query 4632 AGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 |||||||| || ||| | || | || || |||||||| ||||| | ||||||| Sbjct 5747020 AGCCAAAAAATGGAGCAGAAACT--TCCTGAGAAGAATATCCCTTCAATACAAGCAAACG 5747077 Query 4690 CTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 | | || | | || || | | | | | |||||| | | |||||| | | Sbjct 5747078 CAATTATCCTCTCTGCAAATGATTCAGAC----CCATCAATCCACCTCAGTGCCCAATCA 5747133 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 || || || || || || || | || | || || ||| | | | ||||| || Sbjct 5747134 GCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGATTTTTGGGAT 5747193 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 | || | ||| ||||| |||| || || |||||||||||||| || ||||| || Sbjct 5747194 GAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAATGAATGTTTTCAATG 5747253 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || || ||||| |||||||| | ||||| | ||||| || || || ||| | Sbjct 5747254 GCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCTCTTTCATAAACCGA 5747313 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || | | ||||| || || || || || || || || || | ||| || | Sbjct 5747314 CCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGGCGAGAACGTGTGTA 5747373 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCA 5048 || || | | ||||| | | || ||| |||||| ||||| | || ||| Sbjct 5747374 ATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAATCGGATGATAGATCG 5747433 Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||||||| | ||||||||||| ||||| |||||||||||||| Sbjct 5747434 ACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACAT 5747477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426840132971918