Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq18444 316 1e-81 >seq18444 Length=649 Score = 316 bits (350), Expect = 1e-81 Identities = 473/660 (72%), Gaps = 21/660 (3%) Strand=Plus/Plus Query 78332 TGGGACACCCTTA-CGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCAC 78390 |||| || |||| ||||| ||||| || | || || || || || ||||||||||| || Sbjct 1 TGGGCGACGCTTAACGCCG-AAGAGCAGAAGCTGACCATCCGCGTCTTCACCGGCCTGAC 59 Query 78391 CCTGCTCGACACCATCCAG---GGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAA 78447 |||||||||||||||||| ||| || ||| || || || || ||||| | | Sbjct 60 ACTGCTCGACACCATCCAGAATGGC---GTCGGCACCGTCCGCCTGATGGCCGATGTGCA 116 Query 78448 CACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAA 78507 |||||||| || || |||||||| |||||||| | |||||||| |||| || ||| Sbjct 117 GACCCCGCATGAAGAAGCGGTGCTGTCCAACATCTCCTTCATGGAAGCGGTCCATGCCCG 176 Query 78508 GTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCG 78567 ||||| |||||||| || || || || || | | | ||||| || | || Sbjct 177 CTCCTATTCGTCGATCTTTTCGACCCTGTGTTCGACGCCCGATGTCGACGACGCCTATCG 236 Query 78568 TTGGTCGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCG 78627 ||| |||||||| | | ||| |||| ||||| | | || || | | || Sbjct 237 CTGGAGCGAGGAGAATGCCTTCCTCCAGCAGAAGGCGACGCTGATCATGAGCCAGTATGA 296 Query 78628 CGGCGACGACCC-CTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCT 78686 | ||| |||| | ||||||| |||||| ||| |||| || ||||||| |||| Sbjct 297 CAGCGGCGACTCGCTTGAAGAAGAAGGTCGCCTCGGTCTTCCTCGAAAGCTTCCTGTTCT 356 Query 78687 ACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGG 78746 | || |||||||||||||| ||||||||||||||||||||||||||||| || ||||| | Sbjct 357 ATTCCGGCTTCTACCTGCCCATGTACTGGTCGAGCCGCGCCAAGCTGACCAATACCGCCG 416 Query 78747 ACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGT 78806 || | ||||| | || ||| ||||| || || || || || || ||||| ||||||| Sbjct 417 ACCTCATCCGCCTCATCATCAAGGACGAGGCCGTGCACGGCTATTATATCGGCTACAAGT 476 Query 78807 ACCAGCGAGGCCTCGAG----ACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTAC 78862 |||||| | | ||| ||| | ||| || |||| || ||||||| | Sbjct 477 TCCAGCGCGAGGTTGAGCGCCTCCCCGAAGCCCGC-AAGCAG---GAAATCAAGGACTTT 532 Query 78863 ACGTTCGATCTGCTCTCGGAGCTCTACGACAACG-AGTGTGACTACACCGAGCAGCTCTA 78921 | |||||||| |||| ||||||||||||| || | | |||||||||| | ||||| Sbjct 533 GCCTTCGATCTCTCCTCG--ACTCTACGACAACGAAGCGCG-CTACACCGAGGACCTCTA 589 Query 78922 TGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGC 78981 ||||| ||| || || |||| || |||||||| ||||||| |||||||| ||||||||| Sbjct 590 TGACGGCGTGGGCCTTGCCGAAGACGTCAAGAAATTCCTGCACTACAACGCCAACAAGGC 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299174783316428