Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq30224 125 1e-23 seq8215 96.9 5e-15 seq28604 89.7 8e-13 seq8306 87.8 3e-12 seq30012 86.0 1e-11 >seq30224 Length=530 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 |||||| | ||||| ||||||||||| |||| || ||||||| |||| ||| Sbjct 183 GAAAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCAC 242 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | || ||| ||| ||||| ||| | || || || ||| | |||| || |||||| Sbjct 243 AATTTGGCCGCAGGATTCCCGCTGCTCACGACCAAGAAGCTATCCCTCAAATCGATCATT 302 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 ||||| ||||| |||||||||| || || |||||||||| || || || || |||| Sbjct 303 CACGAACTGCTCTGGTTCCTGAGGGGCGATACCAACATCAAGTATCTCAAGGACCACGGC 362 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 ||| | ||||||||||| |||||| Sbjct 363 GTCTCGATCTGGGACGAGTGGGCG 386 >seq8215 Length=829 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 738 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 797 Query 2770 TCAGTCCTGCCAT 2782 ||| || ||||| Sbjct 798 TCACTCGCGCCAT 810 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 612 TGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 671 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 672 TCACTCGCGCCA 683 >seq28604 Length=545 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 276 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 335 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 336 TCACTCGCGCCA 347 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 416 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 475 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 476 TCACTCGCGCCA 487 >seq8306 Length=821 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| Sbjct 545 TGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 486 Query 2770 TCAGTCCTGCCAT 2782 ||| || ||||| Sbjct 485 TCACTCGCGCCAT 473 >seq30012 Length=532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || || | |||||| Sbjct 330 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTCACGCCTTCGG 271 Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343 |||||||| |||||| | | ||||||||| Sbjct 270 TGGTTCGAATCCACCTCCCTCCACCAGTT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787923415916000