Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq127 275 9e-69 >seq127 Length=60962716 Score = 275 bits (304), Expect = 9e-69 Identities = 429/607 (71%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 ||| |||||| ||||||||||||||||| ||||| |||| | || ||||| || |||| Sbjct 5746928 ACAATAAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAA 5746987 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | || | ||| |||||||| ||||| || || |||||||| || | |||| ||| | Sbjct 5746988 ACGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTG 5747047 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 | |||||||| ||||| | ||||| || | | |||||| | || || | | Sbjct 5747048 AGAAGAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGC--AAATGATTCAGA 5747105 Query 48313 TGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | ||||||| ||||||||||||||||||| || ||||| |||| ||||| || Sbjct 5747106 CCCATCAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGAT 5747165 Query 48371 AGCATTAAAGAGAA-AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 || |||||| || ||||| || ||| |||| |||||| |||| ||| || Sbjct 5747166 TGCTCGAAAGAGGTGAGATTTTTGGGATGA-ATCCTTAATGTAAGTTTCTA--AAAGGAG 5747222 Query 48430 TA--TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 | |||||||| || ||||| |||||||| || || ||||| |||||||| | ||| Sbjct 5747223 TGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGC 5747282 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||| | || || ||||| | ||| || | || | ||| || || |||||||| Sbjct 5747283 TTCAGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATC 5747342 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 || || || || || | || ||| |||| |||| ||| |||| |||||| || | Sbjct 5747343 TGATGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGT 5747402 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | ||||| | | ||| ||||| ||| ||||||||||| |||||||| ||||| || Sbjct 5747403 TTCCCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 5747462 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATT 48727 |||||||| ||||| | ||| || | ||||| |||||||| ||| ||| ||| Sbjct 5747463 GGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATC 5747522 Query 48728 TGGATTT 48734 ||| ||| Sbjct 5747523 TGGGTTT 5747529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||||| || || || |||||||| | ||||| |||| | | || Sbjct 7119671 CTCTCTTTCATATTTGGTGTAGAGGTTCTCAAATTCTTTACCCCAGCAATCAGCAAGACC 7119730 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || ||||||| || || | ||| ||||| | |||| | | || ||||| || ||| | Sbjct 7119731 TGGAGATTCATTAGGACAGAACAAGGACCATTGCCCAT-TACTTTGAACTCTTTCCATGA 7119789 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | |||||||||| ||| ||||||| ||| |||||||| Sbjct 7119790 AAAGATCAGGTACCCAGAGAGCAAAAAAAAGATCTCG 7119826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694319329493440