Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq127 266 5e-66 >seq127 Length=60962716 Score = 266 bits (294), Expect = 5e-66 Identities = 598/891 (67%), Gaps = 12/891 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || | ||||| || |||||||| || |||| | || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | || ||||| || | | || | | | | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | |||||| ||||| || || |||||| |||||| ||||| ||||| |||| | Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || | || || | ||| || ||||| || ||||| | |||| Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 ||| | |||||| | || | | |||| | | ||| |||||| |||||| Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||||||||| ||||| |||| | || ||||| || ||||| || | || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 || |||||||| || |||||||| || | |||| ||| || |||||||| ||||| Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCA 5747064 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CATCATTATGAATCCACCTTT 46816 | | || || || | | |||||| | || || || || ||||||||| Sbjct 5747065 ATACAAGCAAACGCAATTATCCTCTCTGC--AAATGATTCAGACCCATCAATCCACCTCA 5747122 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA-AG 46875 | |||||||||||||| || || ||||| |||| ||||| || || |||||| || Sbjct 5747123 GTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAG 5747182 Query 46876 tttttttC-ATCACTATCTTTAACATATGTATCTATTAAAAGACTA--TACATTTCTGAA 46932 ||||| || | ||| |||| || || |||| ||| || | |||||||| ||| Sbjct 5747183 ATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTA--AAAGGAGTGAGTACATTTCAGAA 5747238 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 |||||||||||||| || || ||||| |||||||| | ||||||| | || ||| Sbjct 5747239 TGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACC 5747298 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 ||| | ||| || | | | ||| || ||| |||||||| || || || || Sbjct 5747299 TCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAG 5747358 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 || | || ||| |||| |||| ||| || |||| ||| || | | ||||| | | | Sbjct 5747359 GCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAA 5747418 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || ||||| ||| ||||||||||| ||||| || || || || |||||||| ||||| Sbjct 5747419 TCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACATT 5747478 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 | ||| || | | |||| || || || ||| ||| ||| ||| ||| Sbjct 5747479 TCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTTT 5747529 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| || || | ||| | || | || |||||| | |||||| Sbjct 7120183 CCTCCTTGGTCAACATATCGTGCTGTATCATTGAACACCCGCAGCATTGGGACAATGCCA 7120242 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| |||||||||||| ||||| ||||| || ||| Sbjct 7120243 TTCGATGTCCCATTTGTACCACGTATATAACTTCCAGTGGCACGGATATTGTGAACAGAG 7120302 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || |||| ||| | |||||| |||| || ||||| || Sbjct 7120303 ACACCAATACCTCCAGCAGATTTACTGATAACAGCACACTCCTTCAGAGTATCATATATT 7120362 Query 76934 CCCTCTATACTATCATCCATCAT 76956 || || || |||||||| |||| Sbjct 7120363 CCTTCAATGCTATCATCTTTCAT 7120385 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||||| || || | |||||||| | ||||| |||| | | ||| Sbjct 7119671 CTCTCTTTCATATTTGGTGTAGAGGTTCTCAAATTCTTTACCCCAGCAATCAGCAAGACC 7119730 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| ||||||| ||||| | ||| ||||| | |||| | | || ||| | || ||| | Sbjct 7119731 TGGAGATTCATTAGGACAGAACAAGGACCATTGCCCAT-TACTTTGAACTCTTTCCATGA 7119789 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 | |||||||||| ||| ||||||| ||| |||||||| Sbjct 7119790 AAAGATCAGGTACCCAGAGAGCAAAAAAAAGATCTCG 7119826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712575740526720