Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq30224 141 1e-28 seq29817 98.7 2e-15 seq22855 87.8 3e-12 seq35772 86.0 1e-11 seq7892 84.2 3e-11 >seq30224 Length=530 Score = 141 bits (156), Expect = 1e-28 Identities = 182/250 (73%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 201838 TGTAAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCT 201896 || |||||| |||||| ||||| || || || || || || ||||| | |||| |||| Sbjct 181 TGGAAAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCC 240 Query 201897 TTAACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCA 201956 || || | ||| || |||||| |||| ||||| ||| | ||| || |||| Sbjct 241 ACAATTTGGCCGCAGGATTCCCGCTGCTCACGACCAAGAAGCTATCCCTCAAATCGATCA 300 Query 201957 TCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACA 202016 | || || ||||| |||||||| | ||| || ||||||||| ||||| | || ||| || Sbjct 301 TTCACGAACTGCTCTGGTTCCTGAGGGGCGATACCAACATCAAGTATCTCAAGGACCACG 360 Query 202017 ACGTCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTA 202076 |||| | ||||||||||| ||||||||| | || || ||| | || ||||| || ||| Sbjct 361 GCGTCTCGATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTCGGTCCGGTCTATGGTT 420 Query 202077 AGCAATGGCG 202086 || ||||| Sbjct 421 CTCAGTGGCG 430 >seq29817 Length=527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 |||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||| Sbjct 418 CGTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTAGTTCGAGTCTAC 477 Query 4092 TCGAGACAACCA 4103 || | |||||| Sbjct 478 CCGGGCCAACCA 489 >seq22855 Length=601 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 3306 ATGCGAGTATAGCTCAGCTGGTAGAGCATCTGGTTCCCAACCAGAGGGTCGTGAGTTCGA 3365 ||||| | |||||||| |||||||||||| ||| ||||| ||||||||||||||||| Sbjct 388 ATGCGGGCGTAGCTCAG-TGGTAGAGCATCACGTTGCCAACGTGAGGGTCGTGAGTTCGA 330 Query 3366 ATCTCATTACTCGCTCCAAT 3385 ||||||| | ||||||||| Sbjct 329 ATCTCATCGCCCGCTCCAAT 310 >seq35772 Length=613 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4024 AATTGTCTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTC 4083 ||| | | |||||||||| |||||||||||| ||||||||||||| |||||||| ||||| Sbjct 107 AATGGGCCCGTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGCAGTTC 166 Query 4084 AAGTCTACTCGAGACAACCA 4103 ||||| | || | | |||| Sbjct 167 GAGTCTGCCCGGGCCCACCA 186 >seq7892 Length=839 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 |||||||||||| |||||||||||| ||| ||||||||| |||||||| ||||||| ||| Sbjct 748 CTCGTAGCTCAGCTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAATCT 689 Query 4090 ACTCGAGACAACCA 4103 | || | | |||| Sbjct 688 TCCCGGGCCCACCA 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787606775290160