Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq127 168 7e-37 >seq127 Length=60962716 Score = 168 bits (186), Expect = 7e-37 Identities = 456/693 (66%), Gaps = 11/693 (2%) Strand=Plus/Plus Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 ||||| || ||||| |||||||| |||| |||||| ||| |||| || |||| | Sbjct 5746768 CTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAAGCA 5746827 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT--- 23457 || || | |||||| | | ||| | ||||| ||| |||||||| | ||| Sbjct 5746828 ACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATCCCC 5746887 Query 23458 TGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAA 23517 || || | || ||| | || | || || | | |||||||||| |||||| Sbjct 5746888 TGCACTTTC---TCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 23518 TCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATT 23577 |||||||| || ||||| || | | ||||||||||| ||||| ||||| || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 23578 AATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAAAATACCCTC 23636 | || || || |||| |||||| | || |||| || ||| || ||||| || || || Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAA-AATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTC 5747063 Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttt 23696 || | ||||| || | | | |||||| | | | | || |||||| | Sbjct 5747064 AATACAAGCAAACGCAATTATCCTCTCTGCAAATGAT---TCAGACCCATCAATCCACCT 5747120 Query 23697 ttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAA 23756 || ||||| ||||||| ||| ||||| | ||||| |||||| ||||| Sbjct 5747121 CAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTG 5747180 Query 23757 AGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATG 23816 || ||||| ||| | || || || || | || | |||||||||||||| Sbjct 5747181 AGATTTTTGGGATGAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATTTCAGAATG 5747240 Query 23817 AATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATC 23876 ||| |||||||| || || ||||| || ||||| | ||||||| | ||| || || Sbjct 5747241 AATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCTC 5747300 Query 23877 ATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGC 23936 || | ||| | || | |||||| || || ||||| || || ||||| || Sbjct 5747301 TTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGGC 5747360 Query 23937 AAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATC 23996 ||||| | | | || |||||| | || || | | || ||| ||| | | | ||| Sbjct 5747361 GAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAATC 5747420 Query 23997 TTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 ||||| ||| ||||| ||| | |||||||| Sbjct 5747421 GGATGATAGATCGACTTCTTCAGCCGTCCAAAA 5747453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521225652424400