Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq58 109 5e-19 seq157 104 2e-17 seq57 96.9 3e-15 seq145 86.0 6e-12 seq146 84.2 2e-11 seq1 84.2 2e-11 >seq58 Length=2649046 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || || ||||||||| || || || |||| |||||| ||| Sbjct 1146916 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGC 1146857 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||| || ||||| ||||| | || ||||| | |||| || ||| Sbjct 1146856 CCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCC 1146797 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| |||| |||| ||| | | | ||| ||| || || || | || Sbjct 1146796 TTGT-CTTGAATTTTGGCTTTGACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGT 1146738 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 1146737 GATTGTCTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 1146699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || || ||||||||| ||||| ||||| | | || | | Sbjct 1147370 ACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCC 1147311 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || |||||||| || ||||| |||| | ||| || || | ||||| | ||||| Sbjct 1147310 ATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTT 1147251 Query 41767 GTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||| |||||| ||| || | ||| | || ||| ||||||||||| || Sbjct 1147250 ATCCTGGATTTTCGCCTTGACATTGTCGATA--GTATCGGAACTCTCCACCTCCAAGGTG 1147193 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || ||||||||||| Sbjct 1147192 ATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 >seq157 Length=426068 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || || |||||||||||| || || || | Sbjct 398056 GCCACCACGGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAATCAGC 397997 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || ||||| ||||| ||||| || ||||| || || ||||| | || Sbjct 397996 AAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGG 397937 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCC 41812 || || |||||||| | ||| | ||||| | ||| | || | ||| | | |||| Sbjct 397936 AATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACATTGTCA-ATTGTATCAGAACTCTCC 397879 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || ||||| ||||| |||| ||||| || || || ||||| Sbjct 397878 ACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCAT 397829 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||||||||||| || | | Sbjct 398967 CCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCG 398908 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 ||||| || | || || | |||||| ||||| || ||||| | ||| || || | ||| Sbjct 398907 AGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGG 398848 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACT 41810 | | || ||||||||| || ||| |||| | | | | ||| || ||| || Sbjct 398847 ATCCCT-TCCTTGTCCTGTATCTTTGTTTTCACATTATCA-ATAGTATCCGAGCT---CT 398793 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || ||||| || || || || ||||| |||||||||||||| Sbjct 398792 CCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq57 Length=33024243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || || ||| ||||| ||||| || || | || ||||| Sbjct 18658241 AGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGA 18658300 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || |||||||| ||||| || |||||||| | |||| || || Sbjct 18658301 CCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCT 18658360 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| ||| ||| |||| || | | | |||||| || || || || | || Sbjct 18658361 TTGTCTTGGATCTTT-GCTTTCACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGT 18658419 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 ||| ||||||||||| || || || ||||| |||||||| || || Sbjct 18658420 TATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTTC 18658464 >seq145 Length=44152522 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || |||||||| || |||| || || || || || ||||| ||||| |||||||||||| Sbjct 3408590 TTTTGAATGTTGTAATCGGCAAGAGTACGGTCATCTTCGAGTTGCTTTCCGGCGAATATC 3408531 Query 41735 AGGCGCTGTTGGTCCGCGGGAA 41756 || ||||||||||||| ||||| Sbjct 3408530 AGACGCTGTTGGTCCGAGGGAA 3408509 >seq146 Length=1334862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || | || ||||| || ||||| || ||||||||||| || || | | Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | || || |||||||| |||||||| ||||| || | ||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGA 1119976 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | || | |||| || ||| | | | || ||| || ||||| Sbjct 1119975 ATTCCTTCTTTGT-CTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCAC 1119917 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| ||||| || || || || || |||||||||||||| Sbjct 1119916 TTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| |||||||||||||| | || || || | || || |||||||| || ||||| Sbjct 3650438 TCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAG 3650379 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | ||| ||||| || |||| | ||||||||| |||| ||| |||| || Sbjct 3650378 ATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCTGTGATCTTTGCCTTC-ACATT 3650320 Query 41792 GAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | | ||| || ||| || || || | || || || || || || || ||||| Sbjct 3650319 GTCAATAGTATCCGAGCT---TTCAACTTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTT 3650263 Query 41848 TACGAAAATCTGCAT 41862 ||||| |||||||| Sbjct 3650262 CACGAAGATCTGCAT 3650248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462071426415200