Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq25376 122 2e-22 seq6427 109 1e-18 seq30814 98.7 2e-15 seq26825 98.7 2e-15 seq21674 98.7 2e-15 seq12664 98.7 2e-15 seq11227 98.7 2e-15 seq10452 98.7 2e-15 seq10184 98.7 2e-15 seq4591 98.7 2e-15 seq3973 98.7 2e-15 seq3615 98.7 2e-15 seq1386 98.7 2e-15 seq19 98.7 2e-15 seq2245 95.1 3e-14 seq41724 93.3 9e-14 seq3220 91.5 3e-13 seq52102 84.2 5e-11 >seq25376 Length=12287 Score = 122 bits (134), Expect = 2e-22 Identities = 303/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| ||||| |||| |||| | || || || || || | || || ||||||||| Sbjct 9783 TTTGCGGAGCGGATCGTTGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGGAGTTTC 9842 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTAACG 230290 ||| | || |||||||| || ||| | ||||||||| | || ||| | || | Sbjct 9843 TGCTCAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTGACGTTCT--CCAATG 9900 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAG 230349 | | ||| || |||||||| ||||| | |||| || || || | || || Sbjct 9901 AACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCG-CGTGCCTACTCTACTCGCTT 9959 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || ||| ||||| ||| || || ||| | || || || |||| | Sbjct 9960 CTAAGGAAGAAGCTGAGCGAGGAGCGCGTGAAGGGGATCGTGCGCGACGCGGTGGAAATC 10019 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468 || ||||||||| | |||||||| | || || ||| || ||| ||||||| || || Sbjct 10020 GAGAAGGAGTTCGTGTGTGACGCGCTGCCGTG-CGCATTGGTGGGGATGAACGGGGACCT 10078 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 |||| | ||||||||||| || || || || | | || | || || || |||| || Sbjct 10079 TATGAGCCAGTACATCGAGTTTGTGGCTGATAGGCTCTTGGGCGCGCTAGGGTACGGCAA 10138 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| || |||||| |||| | |||||||| || ||| | || || ||||| Sbjct 10139 GGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGTAAGAC 10198 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 || ||||| || ||| | ||| | || ||||| Sbjct 10199 TAATTTCTTTGAGAAGAGGGTCGGAGAGTATCA 10231 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||| ||||| || || || || ||||| |||||||||||||| | ||| Sbjct 9364 TCTGCATGTTCCCGATCCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCTT 9423 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| | ||||| ||| ||| | ||| || | ||||| || || | Sbjct 9424 CCTTCTGGACCGCGGAGGAGGTTGATCTCTCCCAGGACCTCCGCCACTGG---GAAAACC 9480 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 | | |||||| || || ||||||| ||| | || | || ||||| | |||||| | Sbjct 9481 TAACCCCCGACGAGCGCCACTTCATCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACG 9540 Query 229931 GTATTGTGATGGAAAATCTG 229950 | || || |||| || ||| Sbjct 9541 GCATCGTTTTGGAGAACCTG 9560 >seq6427 Length=124401 Score = 109 bits (120), Expect = 1e-18 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 319777 ATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCA 319836 |||||||| | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 111235 ATGAAGTCCAGGATAGAAATGTCACCCTCGGAGCCGTCCAGGTCGTGCTCGACGTACCAG 111176 Query 319837 GTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATC 319896 ||| | | || | |||||||| || || | ||| |||||| ||||||||||| Sbjct 111175 GTTCGGACCTCTTCTGGCGAGGGGAAGCCCTCGACCTGACCGTTCTGGATAGCGCGCATG 111116 Query 319897 AGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAG- 319955 || || || || || | |||||| | ||||| |||||||| |||| || || ||||| Sbjct 111115 AGCGTCGACTTTCCGGAACCGTTTCGGCCACAGAGACCGTAACGGTGACCACGCTTCAGA 111056 Query 319956 -GTTGAACCGC-GTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAA 320013 | || || |||||| || ||||| || |||| || ||||| || || | ||| Sbjct 111055 CGCAGAGTGGCAGTGTTG---AGGAGAATCTTGGCACCGTAGGCCAGCGAGAACTGACAG 110999 Query 320014 TCACACAGATCCTCACC 320030 | ||||| |||||||| Sbjct 110998 TTGCACAGGTCCTCACC 110982 >seq30814 Length=10280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3444 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3385 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3384 CCCACGGTGGGC 3373 >seq26825 Length=781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 444 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 385 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 384 CCCACGGTGGGC 373 >seq21674 Length=14232 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12375 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12434 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12435 CCCACGGTGGGC 12446 >seq12664 Length=37298 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 30586 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30527 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30526 CCCACGGTGGGC 30515 >seq11227 Length=49274 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 31536 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 31595 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 31596 CCCACGGTGGGC 31607 >seq10452 Length=39359 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 35015 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35074 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35075 CCCACGGTGGGC 35086 >seq10184 Length=77574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 57354 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 57413 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 57414 CCCACGGTGGGC 57425 >seq4591 Length=65851 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 27611 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27552 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27551 CCCACGGTGGGC 27540 >seq3973 Length=49356 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1734 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1793 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1794 CCCACGGTGGGC 1805 >seq3615 Length=122315 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 34077 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34018 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34017 CCCACGGTGGGC 34006 >seq1386 Length=135842 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 135694 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 135635 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 135634 CCCACGGTGGGC 135623 >seq19 Length=122533 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16066 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16125 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16126 CCCACGGTGGGC 16137 >seq2245 Length=101203 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| ||||||| || || || |||| || |||||||||||||||||| Sbjct 43164 GCCCGTCTAGCTCAGTTGGTAGAGTGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43105 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43104 CCCACGGTGGGC 43093 >seq41724 Length=31058 Score = 93.3 bits (102), Expect = 9e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || |||| | |||| ||| ||| | || ||| | || || | Sbjct 25275 ATCATCACTGAGGCCGTTGGCATCGAACAGGCCTTCCTGACCGATGCTCTGCCTTGCTCC 25334 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || || ||||||||| | || ||| | || |||||||| | ||| |||||||| | Sbjct 25335 CTCATCGGTATGAACGCTAAGCTGATGTGCCAATACATCGAGTACGTCGCCGACCGACTG 25394 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | || || ||||||| ||||| | | |||||||||| ||||||||| Sbjct 25395 CTCGTCTCCCTCGGCAACGAGAAGCACTACAATGCCACCAACCCCTTTGACTTTATGGAG 25454 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 ||| || || || ||||| ||||||||||| ||| Sbjct 25455 AACATCAGTCTGCAGGGCAAGACGAACTTCTTCGAGAAG 25493 >seq3220 Length=44848 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||| Sbjct 18519 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAG 18460 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 18459 CCCCTCGGTGGGC 18447 >seq52102 Length=2659 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 282600 ATTTCTTCGTTCTTTGTGATACTTGCCACAGATGCATCGCGAACGTTCAGCAACTTACCG 282659 |||||| ||||||| | || | || ||||| ||||||||||||| || |||||| Sbjct 1904 ATTTCTGCGTTCTTCGAAATCTGATCGACTGATGCGTCGCGAACGTTCAACATCTTACCA 1845 Query 282660 CGGAGAGGAAAAACACCATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGT 282719 || ||||| || ||||| || || | || || | |||| |||| |||||| Sbjct 1844 CGCAGAGGGAAGACACCGAATAGATCCTGGTTAACAACAGCTCGTCCAGCAAGTGCAAGC 1785 Query 282720 GTTGCTGCGGAATCTCCCTCCGTCAAGATGAGAGTACAC 282758 | || || || || || || |||||||||||||||||| Sbjct 1784 ATAGCAGCCGAGTCACCTTCTGTCAAGATGAGAGTACAC 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1050343691796450