Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq41724 102 8e-17 seq516970 100 3e-16 >seq41724 Length=31058 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | || ||||| ||||| ||| Sbjct 25201 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGACCTCGCTTC 25142 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || |||| ||| || || || || ||||| ||||||||||||| ||||| Sbjct 25141 TTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAGATACCCTCGACGGCGGCAAAT 25082 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || || | ||| ||||| | || |||| |||| | |||||| | | |||| ||| Sbjct 25081 GCAATGAGTCGCTCGGCAAAGGTGGCGTTCTTGTCGCTGATCCATCGCAGGGCCCAGTCG 25022 Query 17165 GCTTTTTGCTT 17175 || |||||||| Sbjct 25021 GCCTTTTGCTT 25011 >seq516970 Length=324 Score = 100 bits (110), Expect = 3e-16 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 |||||||| || || ||||| | ||| || || | ||||| || ||||| ||||| Sbjct 324 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAGCCAGAGAAGAAG 265 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 ||||||||||||| || || || || || || | | | |||| ||| |||| | Sbjct 264 ATACCCTCGACGGCGGCGAAAGCAATCAAGCGGCAGCCAAATGTCGAGTCCTTGTCGCAG 205 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| || | |||| ||||| ||| ||| |||||| || | || ||||| || Sbjct 204 ATCCACTTGAGGGCCCAGTCGGCCTTTCTCTTGATGCAAGGAATGTTGTCGATGGCGTTG 145 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | | || || | ||| | || || || |||||||| | ||| | Sbjct 144 AAGAGGTAGGTACGTTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAATGAGTAAGTC 85 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 |||||||| ||||||||||| || || || ||||| || |||| ||| || | || Sbjct 84 TCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAACATCTGGCCTCGGGGATC 25 Query 17324 TGAACTTC 17331 ||||| || Sbjct 24 TGAACCTC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513975085252200