Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25376 89.7 5e-13 seq2580 89.7 5e-13 >seq25376 Length=12287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 ||| |||||||||||||| || || || ||||||| ||| ||||| ||||| || || Sbjct 9947 TAGGCACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGT 9888 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAA 16316 || || |||||| ||||| || |||| ||| ||||| | |||| || |||||| | Sbjct 9887 CAAGCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGA 9829 Query 16317 AGAATATACCCTCAAC 16332 |||| || ||||| || Sbjct 9828 AGAAGATCCCCTCGAC 9813 >seq2580 Length=28588 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 ||| |||||||||||||| || || || ||||||| ||| ||||| ||||| || || Sbjct 12068 TAGGCACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGT 12009 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAA 16316 || || |||||| ||||| || |||| ||| ||||| | |||| || |||||| | Sbjct 12008 CAAGCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTG-AGCAGAAACTCCCCGAGA 11950 Query 16317 AGAATATACCCTCAAC 16332 |||| || ||||| || Sbjct 11949 AGAAGATCCCCTCGAC 11934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507886184017800