Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq507837 116 4e-21 seq2580 111 2e-19 seq537914 104 3e-17 seq41724 102 1e-16 seq1776 102 1e-16 seq370110 89.7 6e-13 seq531702 86.0 7e-12 >seq507837 Length=291 Score = 116 bits (128), Expect = 4e-21 Identities = 187/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | ||||| || |||| | | ||||| ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || || || |||| | || ||| || ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | || || || ||||| || || | ||| |||| | | || || Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || || || || | ||||| ||| ||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 54236 ATAATACCATTGGATGCACCATTGGTCCC 54264 | ||| || ||||| |||||||||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCC 10 >seq2580 Length=28588 Score = 111 bits (122), Expect = 2e-19 Identities = 233/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||||| || | ||| ||||| ||||| | Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAG 12005 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||||| || |||||||| ||||||||||| || ||| || || || ||||| Sbjct 12004 CCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAA 11946 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--AC-CGGCGCTGTCATG 24310 || || || || ||| ||||||| | | || || | || ||| || ||| Sbjct 11945 GATCCCCTCGACGCACGCGAAGGCAACGATCCGCTCCGCAAAGGACTCGGAGC---CATC 11889 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | |||||||| || ||||| || ||||| || || | Sbjct 11888 GATCCAGCGGAGGGCCCACTGCGCCTTCTTGGCCACGCAAGGGATGGTCTCGATCGCGTG 11829 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 || || ||| || || ||| || | || || |||| ||| || || ||||| Sbjct 11828 GAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTACAT 11769 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || || || ||||| |||||||| || || || || ||||| Sbjct 11768 CTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAA 11727 >seq537914 Length=527 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| |||||||| | |||||||||||| || || ||||| || ||| | | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | |||||| || || ||||| | ||| |||||||| || | || | ||| | Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||| ||||| ||||| || | ||| | | |||| | ||| || | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| || | || ||||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq41724 Length=31058 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 25222 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGA 25163 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || ||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 25162 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGATCCCGAGAAGAAG 25103 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTC 24285 || || || || || ||||| ||||| |||| Sbjct 25102 ATACCCTCGACGGCGGCAAATGCAATGAGTC 25072 >seq1776 Length=16993 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987 |||||||||| | ||||| |||||| || ||||||||| || |||| || ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047 |||| || || | ||| ||||| | || ||| | | |||| || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 |||| ||||||||||| | ||||||||||| | || ||| || || Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq370110 Length=160 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 ||| || ||||| || ||||| ||||||||||| || ||||| || ||||| || || || Sbjct 160 GGAGAAGGTGAGACCCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGA 101 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 24285 ||| || ||||| |||||||| || || || || |||| |||| Sbjct 100 TCCCGAGAAGAAGATTCCTTCGACGGCAGCGAAAGCAACGAGTC 57 >seq531702 Length=428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| ||| | | |||||| ||||| || || |||||| || |||| || Sbjct 204 TCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 263 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||| | ||| ||||| | ||| ||||| ||||| | | | |||| || ||| ||| Sbjct 264 GGAGACTCACTAGGACAAAACAATGACCATTCTCCATTACTTTGGACTCTTTCCATGAAG 323 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATC 54075 |||||||| | ||||||||| ||||||||| Sbjct 324 AGATCAGGCACCCAAAGAGCATAAAATAGATC 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589625551789200